View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_high_6 (Length: 414)
Name: NF3889_high_6
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 170908 - 171125
Alignment:
| Q |
9 |
aatgatacaagaatgaagcattaattacatcgatgttggtagtgtctttctcataggtaagacctgggaacgagcataacaaaataattaccttgtcttt |
108 |
Q |
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| T |
170908 |
aatgatacaagaatgaagcattaattacatcgatgttggtagtgtctttctcataggtaagacctgggaacgagcataacaaaataattaccttgtcttt |
171007 |
T |
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| Q |
109 |
ctcatcgatctttaccccaaacctaaccagatcaacgatcatttgttgaagacattaacatgttgcgaaccaagtcattcatacatctttcggttgtata |
208 |
Q |
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| T |
171008 |
ctcatcgatctttaccccagacctaaccagatcaacgatcatttgttgaagacattaacatgttgcgaaccaagtcattcatacatctttcggttgtata |
171107 |
T |
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| Q |
209 |
gtcactgcttcacaaata |
226 |
Q |
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|||||||||||||||||| |
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| T |
171108 |
gtcactgcttcacaaata |
171125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 225 - 409
Target Start/End: Original strand, 171271 - 171455
Alignment:
| Q |
225 |
tagtttctttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
324 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171271 |
tagtttatttatcagcgtcttggtcatatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtct |
171370 |
T |
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| Q |
325 |
gaaacacataaacatatcaatcatgtgaccttctttatcatctctacttaagtggtatcctctatgttggttggtttcatctcac |
409 |
Q |
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| T |
171371 |
gaaacacataaacatatcaatcatgtgaccttctttatcatctctacttaagcggtatcctctatgttggttggtttcatctcac |
171455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 326
Target Start/End: Original strand, 10811500 - 10811577
Alignment:
| Q |
249 |
catatactgactgttcaatttatctcaaacctccttcaaagttgttaggtccataatatgatacatcacctcgtctga |
326 |
Q |
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|||||||| ||| |||||||||||||||||||||||||| || | | |||||| |||||||||| ||||| ||||| |
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| T |
10811500 |
catatactaactcttcaatttatctcaaacctccttcaaggtcgacaagtccatggtatgatacataacctcttctga |
10811577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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