View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_10 (Length: 305)
Name: NF3889_low_10
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_10 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 8762729 - 8763007
Alignment:
| Q |
18 |
accttgattctagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgattatat |
117 |
Q |
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| T |
8762729 |
accttgattctagagctctctgagacatgccttcaaccattcctttctcggcaacatctcgcagaaatatgcgatacttctgcaagtattgtgatcatat |
8762828 |
T |
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| Q |
118 |
ataccaaagcattagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattataattcagtctgcta |
217 |
Q |
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| T |
8762829 |
--accaaagcattagagtttgcaagatatactcgagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattatcattcagtctgcta |
8762926 |
T |
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| Q |
218 |
atgatgatattataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctg |
298 |
Q |
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| T |
8762927 |
atgatgttattataatattattgaaatatatgatgtaaatttagaagaaaaacctgtaagtgacttgctacattttctctg |
8763007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 28 - 298
Target Start/End: Original strand, 8789222 - 8789486
Alignment:
| Q |
28 |
tagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgattatatataccaaagc |
127 |
Q |
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| T |
8789222 |
tagagctctgtgagata-gcctccaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgatcatata--ctaaagc |
8789318 |
T |
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| Q |
128 |
attagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattataattcagtctgctaatgatgatat |
227 |
Q |
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| T |
8789319 |
attagagtttgcaagatatactagagaaagttaagacaacgacaaaaattagagacagaaaaattatcaacattatcattcagtctgcta---atgatat |
8789415 |
T |
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| Q |
228 |
tataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctg |
298 |
Q |
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| T |
8789416 |
tataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacctgctacattttctctg |
8789486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 8918 - 8874
Alignment:
| Q |
253 |
taaattgagaagaaaaacctgtaagtgacttgctacattttctct |
297 |
Q |
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| T |
8918 |
taaattgagaagaaaaacctgtaaatgactggctacattttctct |
8874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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