View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_11 (Length: 304)
Name: NF3889_low_11
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 21830586 - 21830332
Alignment:
| Q |
6 |
agcagcagagataatgccagccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagtt |
105 |
Q |
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| T |
21830586 |
agcagcaaagataatgccagccacagcaccagctccaatttgtttcccacttttctgtgatgctttgttttcatatttctgattagcttctacttgagct |
21830487 |
T |
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| Q |
106 |
gccataggaagtgatgaacattttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaagaagagatatgctgatggtggaaaag |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21830486 |
gccataggaagtgatgaacattttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaagaagagatatgctgatggtggaaaag |
21830387 |
T |
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| Q |
206 |
ctatagggttttcgtaaacaagtccatgaggtgctctttcttgagatgttgctat |
260 |
Q |
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| T |
21830386 |
ctatagggttttcataaacaagtccatgaggtgctctttcttgagatgttgctat |
21830332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 11791784 - 11791621
Alignment:
| Q |
14 |
agataatgccagccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagttgccatagg |
113 |
Q |
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| T |
11791784 |
agataattccagccacgtcaccagctccaatttgtttcccattcttctatgatgcttagttttcatatttctgattagct--tactagagctgccatagg |
11791687 |
T |
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| Q |
114 |
aagtgatgaacattttgatgtagtacaagagtttttggtctcgtaagttcgtgcattgggatgaaa |
179 |
Q |
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| T |
11791686 |
aagggatgaacatttggatgtagtgcaagagtttttggtctcaggagttcgtgcatttggatgaaa |
11791621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 45630605 - 45630441
Alignment:
| Q |
14 |
agataatgccagccacggcaccagctccaatttgtttcccattcttctgtgattctttgttttcatatttctgattagcttctacttgagttgccatagg |
113 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| |||| ||| ||||||||| |
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| T |
45630605 |
agataattccagccacgtcaccagctccaatttgtttcccattcttctatgatgcatagttttcatatttctgattagct--tactagagctgccatagg |
45630508 |
T |
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| Q |
114 |
aagtgatgaacattttgatgtagtacaagag-tttttggtctcgtaagttcgtgcattgggatgaaa |
179 |
Q |
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| T |
45630507 |
aagggatgaacatttggatgtagtgcaagagttttttggtctcaggagttcgtgcatttggatgaaa |
45630441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 40188390 - 40188476
Alignment:
| Q |
168 |
attgggatgaaagaagagatatgctgatggtggaaaagctatagggttttcgtaaacaagtccatgaggtgctctttcttgagatgt |
254 |
Q |
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||||||||||||||| |||||||||||||| ||| ||| ||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
40188390 |
attgggatgaaagaattcatatgctgatggtgaaaatgcttcaggattttggtaaacaagtccatgaggtgctctttcttgagatgt |
40188476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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