View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_18 (Length: 206)
Name: NF3889_low_18
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 21830119 - 21830292
Alignment:
| Q |
18 |
cttttcacaagatataa---attcaaagttgaaggaccaataaatacttcctcaagacctgaaa-cattataaaagggcaaggcaaacaccacaacttct |
113 |
Q |
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| T |
21830119 |
cttttcacaagatataataaattcaa-gttgaaggaccaataaatacttcctcaagacctgaaaacattataaaagggcaaggcaaacaccacaacttct |
21830217 |
T |
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| Q |
114 |
cacccaaaagctacacatt---ttcttctaaattatttacacaaatccaaaataacaaacatgagtccctttaac |
185 |
Q |
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||||||||||||||||||| ||||||||| |||| || | ||| ||||||||||||||||||||||||||||| |
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| T |
21830218 |
cacccaaaagctacacattttcttcttctaagttatatataaaaacccaaaataacaaacatgagtccctttaac |
21830292 |
T |
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