View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_3 (Length: 621)
Name: NF3889_low_3
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_3 |
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| [»] scaffold0450 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 8762729 - 8763244
Alignment:
| Q |
18 |
accttgattctagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgattatat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8762729 |
accttgattctagagctctctgagacatgccttcaaccattcctttctcggcaacatctcgcagaaatatgcgatacttctgcaagtattgtgatcatat |
8762828 |
T |
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| Q |
118 |
ataccaaagcattagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattataattcagtctgcta |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8762829 |
--accaaagcattagagtttgcaagatatactcgagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattatcattcagtctgcta |
8762926 |
T |
|
| Q |
218 |
atgatgatattataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattca |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8762927 |
atgatgttattataatattattgaaatatatgatgtaaatttagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattca |
8763026 |
T |
|
| Q |
318 |
tgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactgattagaattaaaaagcctttcat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
8763027 |
tgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactaattagatttaaaaagcctttcat |
8763126 |
T |
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| Q |
418 |
aagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttgt |
517 |
Q |
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| T |
8763127 |
aagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaagtttttgt |
8763226 |
T |
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| Q |
518 |
ttcttaacaacttgaata |
535 |
Q |
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|||||||||||||||||| |
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| T |
8763227 |
ttcttaacaacttgaata |
8763244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 8789222 - 8789577
Alignment:
| Q |
28 |
tagagctctctgagacatgccttcaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgattatatataccaaagc |
127 |
Q |
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||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| |
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| T |
8789222 |
tagagctctgtgagata-gcctccaaccattcctttctctgcaacatctcgcagaaatatgcgatacttctgcaagtattgtgatcatata--ctaaagc |
8789318 |
T |
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| Q |
128 |
attagagtttgcaagatatactagagaaagttaagataatgacaaaaattagagacagaaaaattatcaacattataattcagtctgctaatgatgatat |
227 |
Q |
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| T |
8789319 |
attagagtttgcaagatatactagagaaagttaagacaacgacaaaaattagagacagaaaaattatcaacattatcattcagtctgctaatga---tat |
8789415 |
T |
|
| Q |
228 |
tataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatctccag |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789416 |
tataatattattgaaatatatgatgtaaattgagaagaaaaacctgtaagtgacctgctacattttctctggtcaagtttggtatattcatgatctccag |
8789515 |
T |
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| Q |
328 |
aattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
389 |
Q |
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| T |
8789516 |
aattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
8789577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0450 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0450
Description:
Target: scaffold0450; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 8918 - 8819
Alignment:
| Q |
253 |
taaattgagaagaaaaacctgtaagtgacttgctacattttctctggtcaagtttggtatattcatgatctccagaattttctttggaacagcctctgaa |
352 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| | |||||| ||||||| |||||||||||| ||| | |||||| |
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| T |
8918 |
taaattgagaagaaaaacctgtaaatgactggctacattttctcttgttaagtttggaacattcattatctccaaaattttctttggcacaacatctgaa |
8819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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