View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3889_low_4 (Length: 570)
Name: NF3889_low_4
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Original strand, 53538435 - 53538976
Alignment:
| Q |
9 |
gaggaggagcacagattataaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttga |
108 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53538435 |
gaggagaagcactgattataaagaatgatagtgctgattttcaatagtgagctctgccatctaattctaaccctcatcatatgattgttgaagcctttga |
53538534 |
T |
|
| Q |
109 |
tcaagtgaggacatggagcctacatggtcacctaaccttccttctataattcattcaatcagctgctgtttgctctgatataaccctctggctgacagat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53538535 |
tcaagtgaggacatggagcctacatggtcacctaaccttccttctataattcattcaatcagctgctgtttgctctgatataaccccctggctgacagat |
53538634 |
T |
|
| Q |
209 |
cacatagagctccccaaaatgctcccaaataccgctgctacaatccactgnnnnnnnntggtaattttaaaggaataaattattgaagtggttaataaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53538635 |
cacatagagctccccaaaatgctcccaaataccgctgctacaatccactgaaaaaaaatggtaattttaaaggaataaattattgaagtggttaaaaaga |
53538734 |
T |
|
| Q |
309 |
gaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggcttgaaaagaaaaagg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53538735 |
gaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaaagcaaagaaatgttaacatgcaatggct-gaaaagaaaaagg |
53538833 |
T |
|
| Q |
409 |
aaaggggtacagggattacaaaatttaacaaactaaggatataatatcaaaaaattgaggtgtgagaatagcattaagatagcagcagaaactttaagtt |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53538834 |
aaaggggtacagggattacaaaatttaacaaactaaggatataatatcaaaaaattgaggtgtgagaatagcattaagatagcagcagaaactttaagtt |
53538933 |
T |
|
| Q |
509 |
actaattctttgttaacaatcattaacaaagaatgcacattat |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53538934 |
actaattctttgttaacaatcattaacaaagaatgcacattat |
53538976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 267 - 414
Target Start/End: Original strand, 7120024 - 7120171
Alignment:
| Q |
267 |
tggtaattttaaaggaataaattattgaagtggttaataagagaaaagactaatgagtgaggggacatgttaatgagagaccatgtatgaaaccaaccaa |
366 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| | || |||||||||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
7120024 |
tggtaattttagaggaataaattattgaagtggttaaatagagaagaaacaaatgagtgagaggaaatgttaatgagagaccatgtatagaaccaaccaa |
7120123 |
T |
|
| Q |
367 |
agcaaagaaatgttaacatgcaatggcttgaaaagaaaaaggaaaggg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7120124 |
agcaaagaaatgttaacatgcaatggcttgaaaagaataaggaaaggg |
7120171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University