View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3889_low_5 (Length: 565)

Name: NF3889_low_5
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3889_low_5
NF3889_low_5
[»] chr8 (3 HSPs)
chr8 (322-565)||(35613240-35613483)
chr8 (56-131)||(11860573-11860648)
chr8 (31-96)||(19710990-19711055)
[»] chr5 (11 HSPs)
chr5 (322-565)||(29292541-29292784)
chr5 (322-564)||(39085514-39085756)
chr5 (70-131)||(25409774-25409835)
chr5 (71-132)||(26504421-26504482)
chr5 (51-132)||(29254498-29254579)
chr5 (25-87)||(30741444-30741505)
chr5 (372-425)||(33646324-33646377)
chr5 (21-127)||(26349617-26349723)
chr5 (66-132)||(32581187-32581253)
chr5 (21-86)||(26342912-26342977)
chr5 (51-132)||(26458019-26458100)
[»] chr2 (2 HSPs)
chr2 (322-565)||(24466929-24467172)
chr2 (322-565)||(4017323-4017566)
[»] chr6 (4 HSPs)
chr6 (412-564)||(18769766-18769918)
chr6 (16-141)||(3067142-3067267)
chr6 (208-314)||(3066972-3067077)
chr6 (322-358)||(18769724-18769760)
[»] chr1 (8 HSPs)
chr1 (51-118)||(17374374-17374441)
chr1 (60-118)||(17382233-17382291)
chr1 (42-126)||(1950105-1950189)
chr1 (58-127)||(1969859-1969928)
chr1 (51-96)||(17326642-17326687)
chr1 (40-103)||(1939374-1939437)
chr1 (51-118)||(17365996-17366063)
chr1 (52-101)||(17356840-17356889)
[»] scaffold0107 (1 HSPs)
scaffold0107 (44-131)||(33824-33911)
[»] chr3 (5 HSPs)
chr3 (26-130)||(29651229-29651334)
chr3 (53-121)||(17224909-17224977)
chr3 (55-127)||(4667723-4667795)
chr3 (55-127)||(4698109-4698181)
chr3 (68-108)||(10594252-10594292)
[»] scaffold1149 (1 HSPs)
scaffold1149 (39-131)||(1207-1299)
[»] chr7 (5 HSPs)
chr7 (44-131)||(12731680-12731767)
chr7 (51-96)||(15985940-15985985)
chr7 (45-127)||(10258436-10258518)
chr7 (59-96)||(11224041-11224078)
chr7 (70-131)||(41619880-41619941)
[»] chr4 (8 HSPs)
chr4 (75-128)||(9246232-9246285)
chr4 (39-131)||(16235459-16235551)
chr4 (70-128)||(9183992-9184050)
chr4 (62-124)||(9245080-9245142)
chr4 (70-128)||(9276644-9276702)
chr4 (70-128)||(9287524-9287582)
chr4 (76-124)||(5691955-5692003)
chr4 (44-88)||(26624611-26624655)
[»] scaffold1826 (1 HSPs)
scaffold1826 (66-128)||(322-384)
[»] scaffold0386 (1 HSPs)
scaffold0386 (66-127)||(13314-13375)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 322 - 565
Target Start/End: Original strand, 35613240 - 35613483
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35613240 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 35613339  T
Q  422 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 521  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35613340 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 35613439  T
Q  522 tcttctagaggctattaaatttgttgttgctaaagacatgtccc 565  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  35613440 tcttctagaggctattaaatttgttgttgctaacgacatgtccc 35613483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 11860648 - 11860573
Alignment:
Q  56 ctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    |||||||||||||||| ||||| |||||||| || |||||| |||||| | ||||| |||||| ||||||| ||||    
T  11860648 ctaaaattaaaatcatcattaattgtctcttcagcacatcaatgtgttgtgtttgttcctttagcacactttgtaa 11860573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 19710990 - 19711055
Alignment:
Q  31 cttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 96  Q
    |||||| ||||| ||||||  |||| ||||||  |||| |||||||||||||||||||||||||||    
T  19710990 cttatggagttgcaaaaaaaacttcttaaaatagaaattattattaaatgtctcttaagtacatca 19711055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 322 - 565
Target Start/End: Original strand, 29292541 - 29292784
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29292541 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 29292640  T
Q  422 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 521  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29292641 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 29292740  T
Q  522 tcttctagaggctattaaatttgttgttgctaaagacatgtccc 565  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  29292741 tcttctagaggctattaaatttgttgttgctaacgacatgtccc 29292784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 322 - 564
Target Start/End: Original strand, 39085514 - 39085756
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 421  Q
    ||||| |||||||||| ||| |||||||||| |||||   | |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||    
T  39085514 ggacaacaggtacatagcacagttctgtggacaaagctgtcacctccattcttgaattgcaatgtcgattgtgcactattcaacaacaactcagtggcag 39085613  T
Q  422 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 521  Q
    | ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39085614 gctacaggttgtgcatccgtaactcaaaaggccaatttatagccgatatgtcaaacttttcacactgctccctcatgcatgtcgaagctgaagcatgggg 39085713  T
Q  522 tcttctagaggctattaaatttgttgttgctaaagacatgtcc 564  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  39085714 tcttctagaggctattaaatttgctgttgctaaagacatgtcc 39085756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 25409835 - 25409774
Alignment:
Q  70 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    ||||||||||||||||||||||||||| || ||| | |||||| |||||||||| |||||||    
T  25409835 attattaaatgtctcttaagtacatcaatgggttgtatttgtctctttaacacaattagtaa 25409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 26504482 - 26504421
Alignment:
Q  71 ttattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 132  Q
    ||||||||||||||||| ||| |||||| |||| | ||||||| ||||||||||||||||||    
T  26504482 ttattaaatgtctcttaggtaaatcattttgttatgtttgtccatttaacacacttagtaag 26504421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 29254579 - 29254498
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 132  Q
    ||||| ||| |||||| |||||||||||||||||||||| |  ||| |||||| | ||||||| ||||||||||||| ||||    
T  29254579 ccttcataacattaaagtcattattaaatgtctcttaagcaagtcaatgtgttatgtttgtccatttaacacacttaataag 29254498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 30741444 - 30741505
Alignment:
Q  25 atagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctctta 87  Q
    |||| ||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||    
T  30741444 atagcacttatgaagttg-agaaaatccttcataaaattaaaatcattattaaatatctctta 30741505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 425
Target Start/End: Complemental strand, 33646377 - 33646324
Alignment:
Q  372 cttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcaggtta 425  Q
    ||||||||||||||| ||||||||| | ||||| ||||||||||| ||||||||    
T  33646377 cttgaaatgcaatgtagattgtgcgttgttcaacaacaactcagtagcaggtta 33646324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 26349723 - 26349617
Alignment:
Q  21 atttatagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaac 120  Q
    |||| |||| |||| | ||||||||| || ||  |||||||||| ||||||||||||| |||||||  ||| |||| |||||| | |||||| ||||| |    
T  26349723 atttttagtgcttaaggagttgtaaataagcccccctaaaattagaatcattattaaacgtctcttttgtagatcaatgtgttatgtttgtcgctttatc 26349624  T
Q  121 acactta 127  Q
    | |||||    
T  26349623 atactta 26349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 32581187 - 32581253
Alignment:
Q  66 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 132  Q
    |||||||||||||||| | ||||||| |||| |||||| | |||||||||||| || ||||| ||||    
T  32581187 aatcattattaaatgtatgttaagtatatcaatgtgttgtgtttgtccctttagcatacttaataag 32581253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 26342977 - 26342912
Alignment:
Q  21 atttatagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctctt 86  Q
    |||| |||| |||| | ||||||||| ||  || |||||||||| |||||||||||||||||||||    
T  26342977 atttttagtgcttaaggagttgtaaataagtctccctaaaattagaatcattattaaatgtctctt 26342912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 26458100 - 26458019
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaag 132  Q
    ||||| ||| || ||| |||||||||||||||||||||| |  ||| |||||| | ||||||| |||| |||||||| ||||    
T  26458100 ccttcgtaacatgaaagtcattattaaatgtctcttaagcaagtcaatgtgttatgtttgtccatttagcacacttaataag 26458019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 322 - 565
Target Start/End: Original strand, 24466929 - 24467172
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24466929 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 24467028  T
Q  422 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 521  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24467029 gctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 24467128  T
Q  522 tcttctagaggctattaaatttgttgttgctaaagacatgtccc 565  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  24467129 tcttctagaggctattaaatttgttgttgctaacgacatgtccc 24467172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 322 - 565
Target Start/End: Complemental strand, 4017566 - 4017323
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaataacaactcagtggcag 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4017566 ggacagcaggtacataacacggttctgtggacaaagccaccgcctccattcttgaaatgcaatgtcgattgtgcgctattcaacaacaactcagtggcag 4017467  T
Q  422 gttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctgaagcatgggg 521  Q
    | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4017466 gctacgggttgtgcatccgtaactcaacagaccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctgaagcatgggg 4017367  T
Q  522 tcttctagaggctattaaatttgttgttgctaaagacatgtccc 565  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  4017366 tcttctagaggctattaaatttgttgttgctaacgacatgtccc 4017323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 412 - 564
Target Start/End: Original strand, 18769766 - 18769918
Alignment:
Q  412 tcagtggcaggttacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgcctgtcgaagctg 511  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18769766 tcagtggcaggctacgggttgtgcatccgtaactcaacaggccaatttatagccggtatgtcaaacttttcacactgctccctcatgccagtcgaagctg 18769865  T
Q  512 aagcatggggtcttctagaggctattaaatttgttgttgctaaagacatgtcc 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18769866 aagcatggggtcttctagaggctattaaatttgttgttgctaaagacatgtcc 18769918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 3067267 - 3067142
Alignment:
Q  16 acataatttatagtacttatgtagttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccct 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3067267 acataatttatagtacttatgtagttgtaaaaaatccttcctaaaattgaaatcattattaaatgtctcttaagtacatcattgtgttatttttgtccct 3067168  T
Q  116 ttaacacacttagtaagagggcacat 141  Q
    ||||||||||||||||||||||||||    
T  3067167 ttaacacacttagtaagagggcacat 3067142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 3067077 - 3066972
Alignment:
Q  208 cctttcatggtaggaaaaggaaaatcacaaaagatgaattttattgttatacgacatatttatgcatgaattaagtgtgttgttgcatgatataagttga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||||||||||||||||||    
T  3067077 cctttcatggtaggaaaaggaaaatcacaaaagatgaattttattattagacaacatattaatgcatgaatt-agtgtgttgttgcatgatataagttga 3066979  T
Q  308 atacacg 314  Q
    |||||||    
T  3066978 atacacg 3066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 18769724 - 18769760
Alignment:
Q  322 ggacagcaggtacataacacggttctgtggataaagc 358  Q
    |||||||||||||||| |||||||||||||| |||||    
T  18769724 ggacagcaggtacatagcacggttctgtggacaaagc 18769760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 17374441 - 17374374
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||| || |||||||||||    
T  17374441 ccttcctaaaattaaaatcattattaaatgtctcttaagtaaatcaatgtgttgttattgtcccttta 17374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 17382291 - 17382233
Alignment:
Q  60 aattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 118  Q
    |||||||||||||| ||||||||||||||||| |||| |||||| || |||||||||||    
T  17382291 aattaaaatcattactaaatgtctcttaagtaaatcaatgtgttgttattgtcccttta 17382233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 1950105 - 1950189
Alignment:
Q  42 gtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactt 126  Q
    |||||||  ||| |||||||||| |||||||||||| ||||||||||||| |||| |||||| |  |||||| |||| |||||||    
T  1950105 gtaaaaagccctccctaaaattagaatcattattaagtgtctcttaagtagatcaatgtgttgtgcttgtccttttagcacactt 1950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 1969859 - 1969928
Alignment:
Q  58 aaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 127  Q
    ||||||| |||||||||||| | |||||||||||||||| |||||| |  |||||| |||| ||||||||    
T  1969859 aaaattagaatcattattaagtatctcttaagtacatcaatgtgttgtgcttgtccttttagcacactta 1969928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 17326642 - 17326687
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 96  Q
    ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  17326642 ccttcctaaaattaaaatcattactaaatctctcttaagtaaatca 17326687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 1939374 - 1939437
Alignment:
Q  40 ttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgtt 103  Q
    ||||||||| |||| | || |||||||||||||| ||| ||||||||||||| |||| ||||||    
T  1939374 ttgtaaaaagtcctccttataattaaaatcattagtaagtgtctcttaagtagatcaatgtgtt 1939437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 17366063 - 17365996
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtcccttta 118  Q
    |||| |||||| |||||| |||| ||||| ||||||||||| |||| |||||| || |||||||||||    
T  17366063 cctttctaaaactaaaattattactaaatatctcttaagtaaatcaatgtgttgttattgtcccttta 17365996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 17356840 - 17356889
Alignment:
Q  52 cttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtg 101  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| ||||    
T  17356840 cttcctaaaattataatcattactaaatatctcttaagtaaatcaatgtg 17356889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 33824 - 33911
Alignment:
Q  44 aaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    ||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||  ||||| |||||||||||||| ||| ||||||||    
T  33824 aaaaaatccttcctaaaattagaatcattgttaaatatctcttaagtataacaaagtgttatttttgtccctttagcacccttagtaa 33911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 29651334 - 29651229
Alignment:
Q  26 tagtacttatgtagttgtaaaaaa-tccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacac 124  Q
    |||| |||||| |||||||||||| || ||||||| |||| |||| |||| |||||||| |||| ||||||| | |||| |  |||||||||||||||||    
T  29651334 tagtgcttatgaagttgtaaaaaaatctttcctaatattataatccttatgaaatgtcttttaaatacatcaatatgttgtacttgtccctttaacacac 29651235  T
Q  125 ttagta 130  Q
    ||||||    
T  29651234 ttagta 29651229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 17224909 - 17224977
Alignment:
Q  53 ttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaaca 121  Q
    |||||||||||  |||||||| |||| |||||||||||| |||| |||||| | |||||||||||||||    
T  17224909 ttcctaaaattggaatcattagtaaaagtctcttaagtagatcaatgtgttgtatttgtccctttaaca 17224977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 4667723 - 4667795
Alignment:
Q  55 cctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 127  Q
    |||||| ||||||| |||||||| ||||||||||| | |||| |||||| | ||||||| |||| ||||||||    
T  4667723 cctaaatttaaaattattattaagtgtctcttaagaagatcaatgtgttatatttgtccatttatcacactta 4667795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 4698109 - 4698181
Alignment:
Q  55 cctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 127  Q
    |||||| ||||||| |||||||| ||||||||||| | |||| |||||| | ||||||| ||||  |||||||    
T  4698109 cctaaatttaaaattattattaattgtctcttaagaagatcaatgtgttatatttgtccatttacaacactta 4698181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 10594292 - 10594252
Alignment:
Q  68 tcattattaaatgtctcttaagtacatcattgtgttctttt 108  Q
    ||||||||||||||||||||||| ||||| |||||| ||||    
T  10594292 tcattattaaatgtctcttaagtgcatcaatgtgttttttt 10594252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 1207 - 1299
Alignment:
Q  39 gttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    ||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||| |  ||||  | |||||||||||| ||| || |||||    
T  1207 gttgtaaaaaatccttcataaaattaaaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa 1299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 12731680 - 12731767
Alignment:
Q  44 aaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    ||||||||||||||||||||| ||||||| |||||| |||| |||||| | ||  ||||| |||||||||||||| ||  ||||||||    
T  12731680 aaaaaatccttcctaaaattagaatcattgttaaatatctcctaagtataacaaagtgttatttttgtccctttagcaaccttagtaa 12731767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 15985940 - 15985985
Alignment:
Q  51 ccttcctaaaattaaaatcattattaaatgtctcttaagtacatca 96  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||    
T  15985940 ccttcctaaaatttgaatcattattaaatgtctcttaagtatatca 15985985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 10258518 - 10258436
Alignment:
Q  45 aaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 127  Q
    ||||| ||||| | |||||| |||||||||||| ||| |||||| || |||| |||||| | ||||| |||| ||||||||||    
T  10258518 aaaaacccttcgtcaaattagaatcattattaattgtttcttaactatatcagtgtgttgtatttgttccttaaacacactta 10258436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 11224078 - 11224041
Alignment:
Q  59 aaattaaaatcattattaaatgtctcttaagtacatca 96  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  11224078 aaattataatcattattcaatgtctcttaagtacatca 11224041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 41619880 - 41619941
Alignment:
Q  70 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    |||| ||||| ||||||| |||||||| | |||| | |||||||||||| ||||||||||||    
T  41619880 attactaaatatctcttaggtacatcaatatgttgtatttgtccctttatcacacttagtaa 41619941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 9246232 - 9246285
Alignment:
Q  75 taaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 128  Q
    |||||||||||||| || ||||||||||| |||||||||||||| |||||||||    
T  9246232 taaatgtctcttaaatatatcattgtgttatttttgtccctttagcacacttag 9246285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 16235551 - 16235459
Alignment:
Q  39 gttgtaaaaaatccttcctaaaattaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttagtaa 131  Q
    ||||||||||||||||| |||||||| |||||||  |||||||| ||||||||||| |  ||||  | |||||||||||| ||| || |||||    
T  16235551 gttgtaaaaaatccttcataaaattagaatcattggtaaatgtcacttaagtacattaaagtgtcatgtttgtccctttagcacgctgagtaa 16235459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 9183992 - 9184050
Alignment:
Q  70 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 128  Q
    |||| |||||||||||||| || |||| |||||| ||||||| |||||| |||||||||    
T  9183992 attactaaatgtctcttaaatatatcaatgtgttatttttgttcctttagcacacttag 9184050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 9245080 - 9245142
Alignment:
Q  62 ttaaaatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacac 124  Q
    ||||||| |||| ||||||||||| || || ||||||||||| ||| |||||||||| |||||    
T  9245080 ttaaaattattactaaatgtctctcaaatatatcattgtgttatttatgtccctttagcacac 9245142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 9276644 - 9276702
Alignment:
Q  70 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 128  Q
    |||| |||||||||||||| || || ||||| || |||||||||||||| |||||||||    
T  9276644 attagtaaatgtctcttaaatatattattgtattatttttgtccctttagcacacttag 9276702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 9287524 - 9287582
Alignment:
Q  70 attattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 128  Q
    |||| |||||||| ||||| || |||| |||||| |||||||||||||| |||||||||    
T  9287524 attactaaatgtcacttaaatatatcaatgtgttatttttgtccctttagcacacttag 9287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 5692003 - 5691955
Alignment:
Q  76 aaatgtctcttaagtacatcattgtgttctttttgtccctttaacacac 124  Q
    ||||||||||||| || |||| |||||| |||||||| |||||||||||    
T  5692003 aaatgtctcttaaatatatcaatgtgttatttttgtctctttaacacac 5691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 26624655 - 26624611
Alignment:
Q  44 aaaaaatccttcctaaaattaaaatcattattaaatgtctcttaa 88  Q
    ||||||| ||||||||| | ||||| |||||||||||||||||||    
T  26624655 aaaaaattcttcctaaactaaaaattattattaaatgtctcttaa 26624611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1826 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1826
Description:

Target: scaffold1826; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 322 - 384
Alignment:
Q  66 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacacttag 128  Q
    |||||||| |||||||| ||||| || |||| |||||| ||||||||||||||  ||||||||    
T  322 aatcattactaaatgtcacttaaatatatcaatgtgttatttttgtccctttagtacacttag 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 13314 - 13375
Alignment:
Q  66 aatcattattaaatgtctcttaagtacatcattgtgttctttttgtccctttaacacactta 127  Q
    |||||||  |||||||||||||| || |||| ||||||||||||||||| |||  |||||||    
T  13314 aatcattcataaatgtctcttaaatatatcaatgtgttctttttgtccccttagaacactta 13375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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