View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_6 (Length: 517)
Name: NF3889_low_6
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Original strand, 170344 - 170801
Alignment:
| Q |
19 |
ctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatg |
118 |
Q |
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| T |
170344 |
ctttggacactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatg |
170443 |
T |
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| Q |
119 |
tagcttttatgagagagtcataattttctagcactcatatccttgaggtagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttg |
218 |
Q |
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| T |
170444 |
tagcttttatgagagagtcataattttctagcactcatatccttgagatagtcgttttcgtgtagactacttacggaaatcaagttctttttcaattttg |
170543 |
T |
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| Q |
219 |
aaatacctcacttgaatgtagtgaaccacttccattgcagcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgtcaggtga |
318 |
Q |
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| T |
170544 |
aaatacctcacttgaatgtagtgaaccacttccagtgcggcgtcatgtggtaagaacaaccaaagtcaagaatccacacataagcacacttgccaggtga |
170643 |
T |
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| Q |
319 |
aacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacggatcatattttttgctcggacaatacctctttcaa |
418 |
Q |
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| T |
170644 |
aacacaaataatatctccttcactgtcaaaatcatcggtttggaccacatttgcttaactggacgggtcatattttttgttcggacaatacctctttcaa |
170743 |
T |
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| Q |
419 |
tgcttgatatgttaccaatcaaagcactaaattgttattctgttctttaattttgatc |
476 |
Q |
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| T |
170744 |
tgcttgatatgttaccaaccaaagcactaaattgttattttgttctttaattttgatc |
170801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 9837796 - 9837658
Alignment:
| Q |
25 |
acactaatcaaatgagagttttaagtgatttgtcaatgaggtattcacaacctttgaattgctcatatcaactttctctagcacctttttaatgtagctt |
124 |
Q |
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|||||||||||| |||| || || |||||||||||||| ||| || || ||| |||||||||| |||| ||| |||| ||||| || || |||||| |
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| T |
9837796 |
acactaatcaaacgagaacttaaaatgatttgtcaatgaagtactcgcagtcttcaaattgctcatgtcaaatttttctaacacctattcaacatagctt |
9837697 |
T |
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| Q |
125 |
ttatgagagagtcataattttctagcactcatatccttg |
163 |
Q |
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| T |
9837696 |
tttttagaaagccataactttctagcactcttgtccttg |
9837658 |
T |
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