View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_8 (Length: 348)
Name: NF3889_low_8
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 130 - 332
Target Start/End: Complemental strand, 3310615 - 3310414
Alignment:
| Q |
130 |
gagcatatatctgctgttttttctctcctccttttggctatatgtttccatgatgttttattccattaacaggtatgcctcctttcctcagatctgattc |
229 |
Q |
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| T |
3310615 |
gagcatatatctgctgttttt-ctctcctccttttggctatatgtttccatgatgttttattccattaacaggtatgcctcctttcctcagatctgattc |
3310517 |
T |
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| Q |
230 |
agttattagtatttttcccttttacatttctgaaatcttcttttgaattattcgtgtgaagtttccatatctgggatgttttattgtatatgtacttctt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3310516 |
agttattagtatttttcccttttacatttctgaaatcttcttttgaattattcctgtgaagtttccatatctgggatgttttattgtatatgtacttctt |
3310417 |
T |
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| Q |
330 |
ttg |
332 |
Q |
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| T |
3310416 |
ttg |
3310414 |
T |
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