View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3889_low_9 (Length: 318)
Name: NF3889_low_9
Description: NF3889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3889_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 41023048 - 41022788
Alignment:
| Q |
49 |
gtttacagggtaaatattcttctctgactcaatataataaaggtgtcataatattgt-atgcaccaaaatattttaaatctaatttactaagaccatttg |
147 |
Q |
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| T |
41023048 |
gtttacagggtaaatattcttctctgactcaatataataaaggtgtcataatattgttatgtaccaaaatattttaaatctaaattactaagacccttcg |
41022949 |
T |
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| Q |
148 |
aatatatttgaattaaaatttaaagcctaatttatgtaacatttttgttatgattgatggattttgcagaataactatgactcagacacttttatttctg |
247 |
Q |
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| T |
41022948 |
aatatatttgaattaaaatttaaagcctaatttatgtaacatttttgttgtgattgatggattttgcagaataactatgactcagacacttttatttctg |
41022849 |
T |
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| Q |
248 |
ggtctaagctatagttctccaatacttgtatgtgccatgagccacttgatcccaacctttg |
308 |
Q |
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| T |
41022848 |
ggtctaagctatagttctccaatacttgtatgtgccatgagccacttgatcccaacctttg |
41022788 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 31523817 - 31523777
Alignment:
| Q |
267 |
caatacttgtatgtgccatgagccacttgatcccaaccttt |
307 |
Q |
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| T |
31523817 |
caatacttgtatgtgccatgagccacttgatcgcaaccttt |
31523777 |
T |
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