View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3890_high_1 (Length: 998)

Name: NF3890_high_1
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3890_high_1
NF3890_high_1
[»] chr2 (17 HSPs)
chr2 (664-980)||(6466770-6467086)
chr2 (293-602)||(6466406-6466709)
chr2 (15-248)||(6466132-6466361)
chr2 (820-980)||(45661111-45661271)
chr2 (820-945)||(45054021-45054146)
chr2 (820-945)||(45662556-45662681)
chr2 (45-109)||(29651783-29651847)
chr2 (34-181)||(3395391-3395538)
chr2 (820-979)||(14872731-14872890)
chr2 (46-109)||(36727644-36727707)
chr2 (820-946)||(41753953-41754079)
chr2 (820-901)||(5788088-5788169)
chr2 (40-109)||(36729286-36729355)
chr2 (42-109)||(25546947-25547014)
chr2 (820-874)||(14869759-14869813)
chr2 (850-940)||(38796831-38796921)
chr2 (897-978)||(41752893-41752974)
[»] chr4 (16 HSPs)
chr4 (664-978)||(42756734-42757053)
chr4 (15-226)||(42757472-42757687)
chr4 (398-593)||(42757122-42757319)
chr4 (735-920)||(11560141-11560325)
chr4 (806-948)||(35648520-35648662)
chr4 (820-980)||(13909799-13909959)
chr4 (820-963)||(24180606-24180749)
chr4 (45-109)||(11559521-11559585)
chr4 (34-181)||(13228693-13228839)
chr4 (897-948)||(22681162-22681213)
chr4 (33-102)||(39976659-39976728)
chr4 (40-100)||(42727943-42728003)
chr4 (664-749)||(39975465-39975549)
chr4 (34-99)||(24183445-24183510)
chr4 (308-341)||(42757356-42757389)
chr4 (927-980)||(50159148-50159201)
[»] scaffold1315 (4 HSPs)
scaffold1315 (664-978)||(1123-1426)
scaffold1315 (408-601)||(869-1062)
scaffold1315 (18-244)||(495-725)
scaffold1315 (308-341)||(790-823)
[»] scaffold1293 (4 HSPs)
scaffold1293 (664-978)||(645-948)
scaffold1293 (408-593)||(1017-1202)
scaffold1293 (18-244)||(1346-1576)
scaffold1293 (308-341)||(1248-1281)
[»] chr8 (25 HSPs)
chr8 (15-244)||(18953228-18953459)
chr8 (293-577)||(18952902-18953179)
chr8 (813-980)||(18431474-18431641)
chr8 (820-978)||(45528202-45528360)
chr8 (664-725)||(18952751-18952812)
chr8 (848-946)||(38291808-38291906)
chr8 (820-948)||(15276763-15276891)
chr8 (820-948)||(15457132-15457260)
chr8 (897-948)||(19263301-19263352)
chr8 (778-854)||(5685854-5685930)
chr8 (820-980)||(43215465-43215625)
chr8 (45-200)||(38290546-38290701)
chr8 (34-111)||(13756537-13756614)
chr8 (820-945)||(15275959-15276084)
chr8 (820-945)||(15456328-15456453)
chr8 (33-102)||(21587047-21587116)
chr8 (664-764)||(21585765-21585864)
chr8 (40-102)||(23394803-23394863)
chr8 (890-980)||(38291303-38291394)
chr8 (54-109)||(40885776-40885831)
chr8 (34-109)||(42797296-42797371)
chr8 (664-749)||(21588216-21588300)
chr8 (820-946)||(23141588-23141714)
chr8 (927-980)||(14377785-14377838)
chr8 (487-566)||(21588395-21588476)
[»] chr3 (17 HSPs)
chr3 (26-244)||(431961-432182)
chr3 (813-980)||(12125411-12125578)
chr3 (897-948)||(50441-50492)
chr3 (822-976)||(10975617-10975771)
chr3 (806-948)||(20934184-20934326)
chr3 (820-945)||(9266725-9266850)
chr3 (832-980)||(9265297-9265445)
chr3 (820-980)||(14240487-14240647)
chr3 (664-914)||(37837506-37837759)
chr3 (34-109)||(50331969-50332044)
chr3 (664-718)||(12745951-12746005)
chr3 (45-111)||(14044292-14044358)
chr3 (34-177)||(20934940-20935082)
chr3 (820-874)||(431984-432038)
chr3 (664-749)||(36096720-36096804)
chr3 (408-458)||(52754740-52754790)
chr3 (33-102)||(36097924-36097993)
[»] chr7 (14 HSPs)
chr7 (26-217)||(42080767-42080959)
chr7 (34-244)||(45406698-45406909)
chr7 (832-975)||(17474587-17474730)
chr7 (832-975)||(17578484-17578627)
chr7 (777-915)||(42078938-42079078)
chr7 (832-964)||(17510082-17510214)
chr7 (832-964)||(17543000-17543132)
chr7 (840-943)||(4110312-4110415)
chr7 (820-945)||(38788088-38788213)
chr7 (34-131)||(43989683-43989779)
chr7 (833-980)||(6202346-6202493)
chr7 (61-109)||(22528933-22528981)
chr7 (777-838)||(15464396-15464457)
chr7 (897-938)||(45100256-45100297)
[»] scaffold0053 (1 HSPs)
scaffold0053 (15-199)||(31011-31194)
[»] chr1 (13 HSPs)
chr1 (795-980)||(31089453-31089639)
chr1 (34-181)||(43387038-43387185)
chr1 (40-181)||(16853617-16853756)
chr1 (43-103)||(3981635-3981695)
chr1 (34-102)||(22636336-22636404)
chr1 (45-93)||(31090337-31090385)
chr1 (45-109)||(47783158-47783222)
chr1 (813-948)||(43387042-43387177)
chr1 (897-940)||(50391934-50391977)
chr1 (820-874)||(16852900-16852954)
chr1 (667-748)||(22635700-22635782)
chr1 (34-131)||(20306722-20306818)
chr1 (832-873)||(27342220-27342261)
[»] scaffold0169 (1 HSPs)
scaffold0169 (813-980)||(5122-5288)
[»] chr6 (8 HSPs)
chr6 (47-109)||(31737226-31737288)
chr6 (820-943)||(24397925-24398047)
chr6 (820-946)||(1599850-1599976)
chr6 (850-963)||(24175782-24175895)
chr6 (34-109)||(1599683-1599758)
chr6 (879-946)||(18089937-18090004)
chr6 (879-945)||(2970425-2970491)
chr6 (45-102)||(24360161-24360218)
[»] scaffold0074 (1 HSPs)
scaffold0074 (820-943)||(30848-30970)
[»] scaffold1312 (1 HSPs)
scaffold1312 (822-948)||(2-128)
[»] chr5 (5 HSPs)
chr5 (40-211)||(38015839-38016012)
chr5 (813-948)||(9048629-9048753)
chr5 (840-937)||(38012839-38012936)
chr5 (813-948)||(38015875-38016010)
chr5 (33-102)||(33012124-33012193)
[»] scaffold0061 (1 HSPs)
scaffold0061 (873-978)||(45568-45673)
[»] scaffold0017 (1 HSPs)
scaffold0017 (873-978)||(153114-153219)
[»] scaffold0050 (1 HSPs)
scaffold0050 (867-963)||(10567-10663)
[»] scaffold1743 (1 HSPs)
scaffold1743 (897-948)||(185-236)
[»] scaffold0377 (1 HSPs)
scaffold0377 (804-915)||(12532-12645)
[»] scaffold0159 (1 HSPs)
scaffold0159 (820-901)||(32461-32542)
[»] scaffold0191 (1 HSPs)
scaffold0191 (862-945)||(12236-12319)
[»] scaffold1782 (1 HSPs)
scaffold1782 (862-948)||(1277-1363)
[»] scaffold1345 (1 HSPs)
scaffold1345 (34-120)||(1849-1934)
[»] scaffold0284 (2 HSPs)
scaffold0284 (879-948)||(114-183)
scaffold0284 (879-948)||(8929-8998)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 664 - 980
Target Start/End: Original strand, 6466770 - 6467086
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacatttttaccatgttgttcctcttatcttat 763  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  6466770 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgtaatagtcaccaactcacatttttaccattttgttcctcttatcttat 6466869  T
Q  764 ttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagag 863  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6466870 ttttccatctcaacatatcatagacatagagaatctcgcccttaagggtgagatgataatgtgtcatttatgagtaaaacttctacattggatccaagag 6466969  T
Q  864 tatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctctta 963  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466970 tatatattgagcaagatataaatgaaatgacaaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctctta 6467069  T
Q  964 tccaaatatgatgatcc 980  Q
    |||||||||||||||||    
T  6467070 tccaaatatgatgatcc 6467086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 293 - 602
Target Start/End: Original strand, 6466406 - 6466709
Alignment:
Q  293 cttaaatcttagccgaggatgtcattggctttaatgcatatttgttattcaatatctgttatttcaaattccttcactttaatgcatatacccaatgttt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | | |     |||       
T  6466406 cttaaatcttagccgaggatgtcattggctttaatgcatatttgttattcaatatctgttatttcaaattccttcacttttagtcttttgt---atg--- 6466499  T
Q  393 acctaacagtaaaacaatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacnnnnnnngattgagtctatt 492  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  6466500 acttaacagtaaaacaatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacattttttgattgagtctatt 6466599  T
Q  493 atcatggtagcatgattatccaatactttccatctccttcacaaattcataaattatctgcaactcattctattaattatattgtcacagataaaacaca 592  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6466600 atcatggtagcatgattatccaatacttttcatctccttcacaaattcataaattatctgcaactcattctattaattatattgtcacatataaaacaca 6466699  T
Q  593 ccctccttaa 602  Q
    ||||||||||    
T  6466700 ccctccttaa 6466709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 6466132 - 6466361
Alignment:
Q  15 cacagacacagagagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgag 114  Q
    |||||||||||||||||| ||||| |||||||||||| ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466132 cacagacacagagagtctcttaatggagaaatgttaacgtgt----tgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgag 6466227  T
Q  115 agagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaatgatgatacaaccaat 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  6466228 agagattattcatatacccaatgctttaggattttgggtgaagaagtgatgtcgatctcacttgtgttgttgctctttgactaatgatgatgcaaccaat 6466327  T
Q  215 gtaggtttccatggaaatcgcaaaattatagtaa 248  Q
    ||||||| |||||||||||  |||||||||||||    
T  6466328 gtaggttcccatggaaatcagaaaattatagtaa 6466361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 820 - 980
Target Start/End: Original strand, 45661111 - 45661271
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||| |||||||| ||||| ||||| |||||| ||| |||   ||||||  |||||||||||| |||    
T  45661111 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattt 45661210  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    || ||| | |||| |||||||||||| ||||  |||||||||||  ||||| | |||||||    
T  45661211 tgaatgaaaatgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgatcc 45661271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 820 - 945
Target Start/End: Complemental strand, 45054146 - 45054021
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||  ||| |||| ||||||||||| |||||| ||| ||  | |||||| || |||||||||| |||    
T  45054146 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtcttaagattt 45054047  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
    || ||| |||||||||||||||||||    
T  45054046 tgaatgaagatgtggtgtcaatctca 45054021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 820 - 945
Target Start/End: Original strand, 45662556 - 45662681
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| |||  ||||||| |||||||||||  ||||| | | |||   ||||||  |||||||||||| |||    
T  45662556 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtcttaagattt 45662655  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
    || ||| |||||||||||||||||||    
T  45662656 tgaatgaagatgtggtgtcaatctca 45662681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 29651783 - 29651847
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    ||||||||||||||| ||||| ||||| ||| |||||| ||||||||||| |||||||| |||||    
T  29651783 atgttaatgtgtcaaatgtgagttaaagtttcacattgaatgcaagagtagatgttgaacaacat 29651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 3395538 - 3395391
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatataccc 133  Q
    ||||| |||| ||||||||||||||  ||||| |||||||   || ||| |||||| |||| ||||||| |||||| | || ||||| | ||||||| |     
T  3395538 ttaatggagagatgttaatgtgtcaggtgtgagttaaaataacactttgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatct 3395439  T
Q  134 attgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgt 181  Q
    | ||  ||| ||||||||||||||  |||| |||||||| ||||||||    
T  3395438 aatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgtgt 3395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 820 - 979
Target Start/End: Original strand, 14872731 - 14872890
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||| ||||||||||||| || ||  |  ||| ||||  ||||||  |||||| |||||   |    
T  14872731 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggagt 14872830  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatc 979  Q
    | | || |||||||||||||||||||||| || | ||||||||   ||||| ||||||||    
T  14872831 taggtgaagatgtggtgtcaatctcacttgtcggatttctcttgaacaaatgtgatgatc 14872890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 36727707 - 36727644
Alignment:
Q  46 tgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||| |||| ||||| | ||||||    
T  36727707 tgttaatgtgtcaattgtgacttaaaatttcacattagatgcaaaagtagatgttaagaaacat 36727644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 820 - 946
Target Start/End: Complemental strand, 41754079 - 41753953
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| | | |||||| ||||||  ||  ||||||| ||||||||||| |||||| ||| ||||  |||||| | ||||||||||| |||    
T  41754079 taatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatatatccaatgtcttaaggttt 41753980  T
Q  920 tggatggagatgtggtgtcaatctcac 946  Q
    || ||  ||||||||||| ||| ||||    
T  41753979 tgaatttagatgtggtgtgaatttcac 41753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 901
Target Start/End: Complemental strand, 5788169 - 5788088
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatata 901  Q
    ||||||||||  ||||| | |||||||||||||  ||  ||||||||||||||||||| |||||| ||| |||| |||||||    
T  5788169 taatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatata 5788088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 109
Target Start/End: Complemental strand, 36729355 - 36729286
Alignment:
Q  40 gagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||| |||||||| |||||| ||||| | ||||||| |||||| ||||||||||| |||||||| |||||    
T  36729355 gagatatgttaatttgtcaagtgtgagtaaaaatttcacattgtatgcaagagtagatgttgaacaacat 36729286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 25546947 - 25547014
Alignment:
Q  42 gaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||| ||||||||||| ||||| ||||| ||  |||||||||||||||  | ||||||||||||||    
T  25546947 gaaatggtaatgtgtcaaatgtgagttaaagttctacattggatgcaagaacatatgttgaaaaacat 25547014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 820 - 874
Target Start/End: Original strand, 14869759 - 14869813
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgag 874  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||| |||||||||||||    
T  14869759 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgag 14869813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 850 - 940
Target Start/End: Original strand, 38796831 - 38796921
Alignment:
Q  850 attggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaa 940  Q
    |||||||  |||||||||| ||||| || |||||| ||||||||  |||||  |||||| |||||| ||||| | | ||||||||||||||    
T  38796831 attggatgaaagagtatatgttgagaaacatataagtgaaatgactaatatgtctaatgccttaagattttgaaagaagatgtggtgtcaa 38796921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 978
Target Start/End: Complemental strand, 41752974 - 41752893
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgat 978  Q
    ||||| ||||||||||||| |||||| |  | ||||||||||||||||| ||||  |  |||||||| || |||||||||||    
T  41752974 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttatgggaattctcttagccgaatatgatgat 41752893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 664 - 978
Target Start/End: Complemental strand, 42757053 - 42756734
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacaccc----ctctatgaaatagtcaccaactcacattttt-accatgttgttcctcttat 758  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    ||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  42757053 aatttactttctatcttctcactaaagaaagaaacaaagacacccacctctctatgaaatagccaccaactcacattttttaccatgttgttcctcttat 42756954  T
Q  759 cttatttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatcc 858  Q
    |||||||||| |||||| |||||||||||||  || |||||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |    
T  42756953 cttatttttctatctcaccatatcatagacacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgc 42756854  T
Q  859 aagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttc 958  Q
    |||| |||||||||||||| |||||| | |||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||  ||||||    
T  42756853 aagactatatattgagcaacatataagttaaatgacaaatatacctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttc 42756754  T
Q  959 tcttatccaaatatgatgat 978  Q
    ||| | |||||| |||||||    
T  42756753 tctaagccaaatgtgatgat 42756734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 42757687 - 42757472
Alignment:
Q  15 cacagacacagagagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattgg--atgcaagagtaaatgttgaaaaacatttg 112  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||||||| | ||| ||| |||||||  ||||||||||| |||||||||||||| ||    
T  42757687 cacagacacggagagtctcttaatagagagatgttaatgtgtcaattgtgagtaaaagtttaacattggatatgcaagagtagatgttgaaaaacatatg 42757588  T
Q  113 agagagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgacta--atgatgatac-aa 209  Q
    || ||||||| ||||||||| | ||  |||||| |||||||||| | |||| ||| |||||||||||||||||||| ||||||||  |||||||||| ||    
T  42757587 agggagatta-tcatatacctaatgtcttaggactttgggtgaaaaggtgatgtcgatctcacttgtgttgttgctatttgactaatatgatgatacaaa 42757489  T
Q  210 ccaatgtaggtttccat 226  Q
     ||||||||| ||||||    
T  42757488 tcaatgtaggcttccat 42757472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 398 - 593
Target Start/End: Complemental strand, 42757319 - 42757122
Alignment:
Q  398 acagtaaaacaatgtagacttgtt-gtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacnnnnnnn-gattgagtctattatc 495  Q
    |||||| || |||||||||||||| ||| ||||||||||| |||||| |||||||||||||||| ||| ||| |||        | |||||||||||||     
T  42757319 acagtagaaaaatgtagacttgtttgtgttgagttgacaacatacatgtgtattagacattttaatttgatgcgacatttttttggttgagtctattatt 42757220  T
Q  496 atggtagcatgattatccaatactttccatctccttcacaaattcataaattatctgcaactcattctattaattatattgtcacagataaaacacac 593  Q
     ||||||||||||| |||| || ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  ||||||||||||    
T  42757219 ttggtagcatgattttccagtaatttccatctccttcacaaaatcataaattatcagcaactcattctattaattatattgtcaatgataaaacacac 42757122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 735 - 920
Target Start/End: Original strand, 11560141 - 11560325
Alignment:
Q  735 tttttaccatgttgttcctcttatcttatttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgt 834  Q
    ||||||||||||||| ||||| |  ||||||||| |||||| || |||| | | ||| | | || | | |||||||| |||||| |||||||||||  ||    
T  11560141 tttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatgggt 11560240  T
Q  835 gagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagttttt 920  Q
    |||| |||||| |||||||||| |||||||||||||||| ||| |||||  ||| |||| |||||||  | |||||||||| ||||    
T  11560241 gagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaatatacttgatgtcttaaggtttt 11560325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 806 - 948
Target Start/End: Complemental strand, 35648662 - 35648520
Alignment:
Q  806 taagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataacta 905  Q
    |||||| |||||| | |||| |||| ||||||| |||||||||||||| |  ||| |||||||||||||||| ||||||  || | ||  |||||| |||    
T  35648662 taagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaacaatataccta 35648563  T
Q  906 atgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||| |||||| ||||   |  ||||||||||||||||||||||    
T  35648562 atgccttaagattttacgtaaagatgtggtgtcaatctcactt 35648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 820 - 980
Target Start/End: Original strand, 13909799 - 13909959
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||  ||| | || ||||||||||| |||||| ||| |||   |||||| || |||||||||| |||    
T  13909799 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattt 13909898  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    || ||| ||||||||||||||||||| || |  |||||||||||  ||||| | |||||||    
T  13909899 tgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgatcc 13909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 820 - 963
Target Start/End: Complemental strand, 24180749 - 24180606
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||| |||||||| ||||| ||||| |||||| |||||||   |||||| ||||| ||||||| |||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctctta 963  Q
    || ||| | |||| ||||||| |||| || |  |||||||||||    
T  24180649 tgaatgaaaatgtagtgtcaaactcatttttggggtttctctta 24180606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 11559521 - 11559585
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||||| ||| || ||||| ||||||||||| |||| |||||||||||||||||||| |||||    
T  11559521 atgttaatatgtaaagtgtgacttaaaatttgatattgtatgcaagagtaaatgttgaacaacat 11559585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 13228693 - 13228839
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatataccc 133  Q
    ||||| |||| ||||||||||||||| ||||| |||||||   |||||| |||||| |||| ||||||| |||||| | || ||||| | ||||||| |     
T  13228693 ttaatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacatataagtgagatgactcatatatct 13228792  T
Q  134 attgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgt 181  Q
    | | | |||  |||||||||||||  |||| |||||||| ||||||||    
T  13228793 aattc-ttaaaattttgggtgaagttgtgatgtcaatcttacttgtgt 13228839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 897 - 948
Target Start/End: Complemental strand, 22681213 - 22681162
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||||| ||||||||||||| ||| || |||||||||||||||||||||||||    
T  22681213 atatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcactt 22681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 39976659 - 39976728
Alignment:
Q  33 attaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||| ||||| |||||| |||||||||||| | ||||| ||| ||||| |||||||||||| |||||||    
T  39976659 attaagagagatatgttattgtgtcaattgtaatttaaattttcacattagatgcaagagtagatgttga 39976728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 42728003 - 42727943
Alignment:
Q  40 gagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgtt 100  Q
    |||| ||||||||||||||||||| | ||||| ||| ||||| |||||||||||| |||||    
T  42728003 gagatatgttaatgtgtcaattgttacttaaagttttacatttgatgcaagagtagatgtt 42727943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 749
Target Start/End: Original strand, 39975465 - 39975549
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcaca-tttttaccatgttgt 749  Q
    |||||||||||| | ||||| | |||||||||||||||||||  |||||||||||   |||||||| |||| |||||||||||||||    
T  39975465 aatttactttctcttttctcttgaaagaaaggaacaaagaca-tcctctatgaaactatcaccaac-cacattttttaccatgttgt 39975549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 24183510 - 24183445
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgt 99  Q
    ||||| |||| |||||||||||| || ||| | ||||||||| |||||| ||||||||||| ||||    
T  24183510 ttaatggagagatgttaatgtgttaagtgtaagttaaaatttcacattgtatgcaagagtagatgt 24183445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 42757389 - 42757356
Alignment:
Q  308 aggatgtcattggctttaatgcatatttgttatt 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  42757389 aggatgtcattcgctttaatgcatatttgttatt 42757356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 927 - 980
Target Start/End: Original strand, 50159148 - 50159201
Alignment:
Q  927 agatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    ||||||||||||||||| |||||| ||||||||||||  |||||  ||||||||    
T  50159148 agatgtggtgtcaatcttacttatgaggtttctcttagtcaaattcgatgatcc 50159201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 143; Significance: 1e-74; HSPs: 4)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 664 - 978
Target Start/End: Original strand, 1123 - 1426
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacattttt-accatgttgttcctcttatctta 762  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||| | |||||||||||||||||||||    
T  1123 aatttactttctatcttctcactaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatctta 1222  T
Q  763 tttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaaga 862  Q
    |||||| |||| | ||||||||||||| | | |||||| | ||||| || ||            |||||||||||||||||||||||||||||| |||||    
T  1223 tttttctatcttaccatatcatagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaaga 1310  T
Q  863 gtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctctt 962  Q
     ||||||||| |||| |||||| | |||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  1311 ctatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctctt 1410  T
Q  963 atccaaatatgatgat 978  Q
    | |||||| |||||||    
T  1411 agccaaatgtgatgat 1426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #2
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 408 - 601
Target Start/End: Original strand, 869 - 1062
Alignment:
Q  408 aatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacnnnnnnngattgagtctattatcatggtagcatga 507  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||| ||||||        |||||||||||||||  |||||||||||    
T  869 aatgtagacttgttgtgttgagttgacaacatacatgtgtattagacattttaatttgatgtgatattttttgattgagtctattattttggtagcatga 968  T
Q  508 ttatccaatactttccatctccttcacaaattcataaattatctgcaactcattctattaattatattgtcacagataaaacacaccctcctta 601  Q
    ||||||| || ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||  |||||||||||| |||||||    
T  969 ttatccagtaatttccatctccttcacaaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactctcctta 1062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 495 - 725
Alignment:
Q  18 agacacagagagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggat--gcaagagtaaatgttgaaaaacatttgaga 115  Q
    |||||| |||||||| |||||||||| |||||||||||||| |||| | | ||| ||  |||||||||  ||||||||| ||||||| |||||| ||||     
T  495 agacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacatatgagg 594  T
Q  116 gagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgacta--atgatgatacaac-ca 212  Q
    |||||||| |||||||| | ||  |||||| |||||||||| |||||| ||| |||||||||||| ||||||| ||||||||  ||||||||||||| ||    
T  595 gagattat-catatacctaatgtcttaggactttgggtgaaaaagtgatgtcgatctcacttgtgctgttgctatttgactaatatgatgatacaactca 693  T
Q  213 atgtaggtttccatggaaatcgcaaaattata 244  Q
    ||||||| || |||  || |||||| ||||||    
T  694 atgtaggctttcatataagtcgcaacattata 725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 790 - 823
Alignment:
Q  308 aggatgtcattggctttaatgcatatttgttatt 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  790 aggatgtcattcgctttaatgcatatttgttatt 823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 143; Significance: 1e-74; HSPs: 4)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 664 - 978
Target Start/End: Complemental strand, 948 - 645
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacattttt-accatgttgttcctcttatctta 762  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||| | |||||||||||||||||||||    
T  948 aatttactttctatcttctcactaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatctta 849  T
Q  763 tttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaaga 862  Q
    |||||| |||| | ||||||||||||| | | |||||| | ||||| || ||            |||||||||||||||||||||||||||||| |||||    
T  848 tttttctatcttaccatatcatagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaaga 761  T
Q  863 gtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctctt 962  Q
     ||||||||| |||| |||||| | |||||| ||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||    
T  760 ctatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctctt 661  T
Q  963 atccaaatatgatgat 978  Q
    | |||||| |||||||    
T  660 agccaaatgtgatgat 645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 408 - 593
Target Start/End: Complemental strand, 1202 - 1017
Alignment:
Q  408 aatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacnnnnnnngattgagtctattatcatggtagcatga 507  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||| ||| ||||||        |||||||||||||||  |||||||||||    
T  1202 aatgtagacttgttgtgttgagttgacaacatacatgtgtattagacattttaatttgatgtgatattttttgattgagtctattattttggtagcatga 1103  T
Q  508 ttatccaatactttccatctccttcacaaattcataaattatctgcaactcattctattaattatattgtcacagataaaacacac 593  Q
    ||||||| || ||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||  ||||||||||||    
T  1102 ttatccagtaatttccatctccttcacaaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacac 1017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 1576 - 1346
Alignment:
Q  18 agacacagagagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggat--gcaagagtaaatgttgaaaaacatttgaga 115  Q
    |||||| |||||||| |||||||||| |||||||||||||| |||| | | ||| ||  |||||||||  ||||||||| ||||||| |||||| ||||     
T  1576 agacacggagagtctcttaatagagagatgttaatgtgtcagttgtaagtaaaagttcaacattggatatgcaagagtagatgttgagaaacatatgagg 1477  T
Q  116 gagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgacta--atgatgatacaac-ca 212  Q
    |||||||| |||||||| | ||  |||||| |||||||||| |||||| ||| |||||||||||| ||||||| ||||||||  ||||||||||||| ||    
T  1476 gagattat-catatacctaatgtcttaggactttgggtgaaaaagtgatgtcgatctcacttgtgctgttgctatttgactaatatgatgatacaactca 1378  T
Q  213 atgtaggtttccatggaaatcgcaaaattata 244  Q
    ||||||| || |||  || |||||| ||||||    
T  1377 atgtaggctttcatataagtcgcaacattata 1346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 1281 - 1248
Alignment:
Q  308 aggatgtcattggctttaatgcatatttgttatt 341  Q
    ||||||||||| ||||||||||||||||||||||    
T  1281 aggatgtcattcgctttaatgcatatttgttatt 1248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 1e-62; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 15 - 244
Target Start/End: Complemental strand, 18953459 - 18953228
Alignment:
Q  15 cacagacacagagagtctattaatagagaaa---tgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacattt 111  Q
    ||||||||| |||| ||||||||| ||||||   |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18953459 cacagacacggagattctattaatggagaaaggttgttaatgtgtcaactgtgaattaaaatttgacattggatgcaagagtagatgttgaaaaacattt 18953360  T
Q  112 gagagagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaatgatgatacaacc 211  Q
    ||| ||||||||||| | ||  | |||||||||| |||||||||||||||||  || ||||||||||| ||||||||||||||| |||||||||||||||    
T  18953359 gagggagattattcaaaaacttaatgctttaggactttgggtgaagaagtgatatcgatctcacttgtattgttgctctttgaccaatgatgatacaacc 18953260  T
Q  212 aatgtaggtttccatggaaatcgcaaaattata 244  Q
     ||||| ||| |||| |||||| ||| ||||||    
T  18953259 catgta-gttcccatagaaatcacaacattata 18953228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 293 - 577
Target Start/End: Complemental strand, 18953179 - 18952902
Alignment:
Q  293 cttaaatcttagccgaggatgtcattggctttaatgcatatttgttattcaatatctgttatttcaaattccttcactttaatgcatatacccaatgttt 392  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| |   |    |  |||       
T  18953179 cttaaatcttagccgaggatgtcattccctttaatgcatatttgttattcaatatctgttatttcaaattccttaactttagtcttt----cgtatg--- 18953087  T
Q  393 acctaacagtaaaacaatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattttagttttatgtgacnnnnnnngattgagtctatt 492  Q
    |||  |||||| ||||||||||||||||| |||| |||||||||||||||| | |||||||||||||| ||| |||||||       |||||||||| ||    
T  18953086 accagacagtagaacaatgtagacttgttttgcttagttgacaaaatacatgtttattagacattttaatttgatgtgacattttttgattgagtctgtt 18952987  T
Q  493 atcatggtagcatgattatccaatactttccatctccttcacaaattcataaattatctgcaactcattctattaattatattgt 577  Q
    ||  |||| ||||||||||||||||  ||| ||||||||||||||||||||||||||| ||| ||| ||||||||||||| ||||    
T  18952986 attttggtggcatgattatccaataaattctatctccttcacaaattcataaattatcggcagctcgttctattaattattttgt 18952902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 813 - 980
Target Start/End: Complemental strand, 18431641 - 18431474
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    |||||| ||||||||||| ||||||| |||||||||  || ||| |||||||||||||||||||| |||||  ||| ||||  |||||| ||||||||||    
T  18431641 gagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatgtctt 18431542  T
Q  913 aagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
     || |||  ||| ||||||||||||| |||| |||| |  |||||||||| | ||||| |||||||||    
T  18431541 caggtttgagatagagatgtggtgtccatcttacttgtggggtttctcttgttcaaatgtgatgatcc 18431474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 820 - 978
Target Start/End: Original strand, 45528202 - 45528360
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    |||||| |||| | ||||| ||| ||| || |||||| || ||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||| |||    
T  45528202 taatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattt 45528301  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgat 978  Q
    ||| || |||| ||||||  ||||||||| |  |||||||||||  ||||| |||||||    
T  45528302 tgggtgaagatttggtgtgtatctcacttgtggggtttctcttaatcaaatgtgatgat 45528360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 664 - 725
Target Start/End: Complemental strand, 18952812 - 18952751
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcac 725  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  18952812 aatttactttctatattctcatcaaagaaaggaacaaagacaaccctctatgaaatagtcac 18952751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 848 - 946
Target Start/End: Original strand, 38291808 - 38291906
Alignment:
Q  848 acattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcac 946  Q
    ||||| ||| |||||||  | |||||| || |||||| |||||| || |||||| ||||||||||||| ||||||||| |||||| |||||||||||||    
T  38291808 acatttgatgcaagagtggacattgagaaacatataagtgaaattatcaatatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 820 - 948
Target Start/End: Complemental strand, 15276891 - 15276763
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||| ||||||||||||| || ||  |  ||| ||||  ||||||  |||||| ||||| |||    
T  15276891 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 15276792  T
Q  920 tggatggagatgtggtgtcaatctcactt 948  Q
    | | || ||||||||||||||||||||||    
T  15276791 taggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 820 - 948
Target Start/End: Complemental strand, 15457260 - 15457132
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||| ||||||||||||| || ||  |  ||| ||||  ||||||  |||||| ||||| |||    
T  15457260 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 15457161  T
Q  920 tggatggagatgtggtgtcaatctcactt 948  Q
    | | || ||||||||||||||||||||||    
T  15457160 taggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 897 - 948
Target Start/End: Complemental strand, 19263352 - 19263301
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  19263352 atatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 19263301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 778 - 854
Target Start/End: Original strand, 5685854 - 5685930
Alignment:
Q  778 atatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattgg 854  Q
    |||||||||||||||| |||||| | ||||| || |||||| ||||||||||| ||||||| | | |||||||||||    
T  5685854 atatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattgg 5685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 820 - 980
Target Start/End: Complemental strand, 43215625 - 43215465
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||| |||||||| ||||| ||||| |||||| ||| |||   ||||||  |||||||||| | |||    
T  43215625 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacggttt 43215526  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    || ||| | |||| |||||||||||| ||||  |||| ||||||  ||||| | |||||||    
T  43215525 tgaatgaaaatgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgatcc 43215465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 38290546 - 38290701
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatatacccattgctttagg 144  Q
    ||||||||||||||| ||||| ||| ||||| |||||  ||||||||| ||||||| |||||||| | || | | | | | ||||||| | ||| ||| |    
T  38290546 atgttaatgtgtcaagtgtgagttataattttacattacatgcaagagaaaatgtttaaaaacatataagtgggttgactgatatacctaatgccttaag 38290645  T
Q  145 attttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaatg 200  Q
    | ||| ||||||||||| | |||||  ||| || ||||||||||||| | ||||||    
T  38290646 acttttggtgaagaagttatgtcaacttcatttatgttgttgctcttagcctaatg 38290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 13756537 - 13756614
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacattt 111  Q
    |||||| ||| ||||||||||||||| ||||| |||||||   |||||| |||||| |||| ||||||| ||||||||    
T  13756537 ttaatatagatatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacattt 13756614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 945
Target Start/End: Complemental strand, 15276084 - 15275959
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| |||  ||||||| |||| ||||||  ||||| | | |||   |||||| ||||||||||||| |||    
T  15276084 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15275985  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
     | ||| |||||||||||||||||||    
T  15275984 cgaatgaagatgtggtgtcaatctca 15275959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 945
Target Start/End: Complemental strand, 15456453 - 15456328
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| |||  ||||||| |||| ||||||  ||||| | | |||   |||||| ||||||||||||| |||    
T  15456453 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15456354  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
     | ||| |||||||||||||||||||    
T  15456353 cgaatgaagatgtggtgtcaatctca 15456328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 21587116 - 21587047
Alignment:
Q  33 attaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||| ||||| |||||| |||||||||||| | ||||| ||| ||||| |||||||||||| |||||||    
T  21587116 attaagagagatatgttattgtgtcaattgtaatttaaattttcacattagatgcaagagtagatgttga 21587047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 664 - 764
Target Start/End: Complemental strand, 21585864 - 21585765
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacatttttaccatgttgttcctcttatcttat 763  Q
    |||||||||||| ||||||| | |||||||| || ||| ||| |||||| |||||  | ||||||| ||| ||||||||||||||| ||||| | |||||    
T  21585864 aatttactttctctcttctcgtgaaagaaagaaaaaaa-acatccctctttgaaactgccaccaacccacctttttaccatgttgtgcctctgaccttat 21585766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 23394863 - 23394803
Alignment:
Q  40 gagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    |||||||||| |||||||||  |||| ||||||||| |||||||||||||||| |||| ||||    
T  23394863 gagaaatgttgatgtgtcaa--gtgagttaaaatttcacattggatgcaagagcaaatattga 23394803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 890 - 980
Target Start/End: Original strand, 38291303 - 38291394
Alignment:
Q  890 atgataaatataactaatgtcttaagtt-tttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    ||||| ||||||  ||||||||||| || |||||||| ||||||||||||||||| | ||||  | |||||||||  ||||| |||||||||    
T  38291303 atgatcaatatatttaatgtcttaatttgtttggatgcagatgtggtgtcaatcttatttatgggatttctcttagtcaaatgtgatgatcc 38291394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 40885776 - 40885831
Alignment:
Q  54 tgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||| ||||| ||||||||| ||||||||||||| | ||||||||||| |||||    
T  40885776 tgtcaagtgtgatttaaaatttcacattggatgcaataataaatgttgaacaacat 40885831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 42797371 - 42797296
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||||| | ||||||||||||||| ||||| |||||||   |||||| |||||| |||| ||||||| ||||||    
T  42797371 ttaatagaaagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtatatgttgagaaacat 42797296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 749
Target Start/End: Complemental strand, 21588300 - 21588216
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcaca-tttttaccatgttgt 749  Q
    |||||||||||| | ||||| | |||||||||||||||||||  |||||||||||   |||||||| |||| |||||||||||||||    
T  21588300 aatttactttctcttttctcttgaaagaaaggaacaaagaca-tcctctatgaaactatcaccaac-cacattttttaccatgttgt 21588216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 820 - 946
Target Start/End: Complemental strand, 23141714 - 23141588
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| | | |||||| ||||||  ||  ||||||| ||||||||||| ||| || ||| ||||  |||||| | ||||||||||| |||    
T  23141714 taatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatatatccaatgtcttaaggttt 23141615  T
Q  920 tggatggagatgtggtgtcaatctcac 946  Q
    || ||  ||||||||||| ||| ||||    
T  23141614 tgaatttagatgtggtgtgaatttcac 23141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 927 - 980
Target Start/End: Original strand, 14377785 - 14377838
Alignment:
Q  927 agatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    |||||||||||||||||||  ||| |||||||||||| |||| || ||||||||    
T  14377785 agatgtggtgtcaatctcatatatgaggtttctcttagccaagtacgatgatcc 14377838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 487 - 566
Target Start/End: Complemental strand, 21588476 - 21588395
Alignment:
Q  487 tctattatcatggtagcatgattatccaatactttccatctccttc-acaaattcat-aaattatctgcaactcattctatt 566  Q
    ||||||||  |||||||||||||| |||||| ||| || | ||||| |||||||||| |||||||| ||| |||||||||||    
T  21588476 tctattattttggtagcatgattacccaataattttcaacaccttcaacaaattcataaaattatcagcatctcattctatt 21588395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 2e-55; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 431961 - 432182
Alignment:
Q  26 agagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattc 125  Q
    ||||||| ||||| |||| || |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||| |||||| ||||  ||||||| |    
T  431961 agagtctcttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgagaaacatatgaggaagattatcc 432060  T
Q  126 atatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgacta--atgatgatacaa-ccaatgtaggttt 222  Q
    ||||| | | |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||     
T  432061 atataactaatgctttaggactttgggtgaagaagtgatgtcgatctcacttgtgttgttgctctttgactaatatgatgatacaatccaatgtaggttc 432160  T
Q  223 ccatggaaatcgcaaaattata 244  Q
    |||| ||| | |||| ||||||    
T  432161 ccatagaagttgcaacattata 432182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 813 - 980
Target Start/End: Complemental strand, 12125578 - 12125411
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    |||||| |||||||||||| |||||| | |||||||| || ||| |||||||||||||||||||| |||||  ||| ||||  |||||| ||||||||||    
T  12125578 gagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtctt 12125479  T
Q  913 aagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
     |  |||  ||| ||||||||||||| |||| |||| |  |||||||||| | ||||| |||||||||    
T  12125478 catgtttgagatagagatgtggtgtctatcttacttgtggggtttctcttgttcaaatgtgatgatcc 12125411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 897 - 948
Target Start/End: Original strand, 50441 - 50492
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  50441 atatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcactt 50492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 822 - 976
Target Start/End: Complemental strand, 10975771 - 10975617
Alignment:
Q  822 atgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttg 921  Q
    ||||||||| ||||||| ||||||||| ||||| | ||| ||||||||||||| || ||||||  || || | ||||| |  |||||||||||| ||||     
T  10975771 atgtgtcatgtgtgagttaaacttctatattggctgcaatagtatatattgagtaacatataagcgagataaaaaatacatataatgtcttaagatttta 10975672  T
Q  922 gatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatg 976  Q
    |  | |||   |||||||||||||||| |  |||||||||||  |||||||||||    
T  10975671 ggcgaagacacggtgtcaatctcacttgtagggtttctcttagtcaaatatgatg 10975617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 806 - 948
Target Start/End: Complemental strand, 20934326 - 20934184
Alignment:
Q  806 taagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataacta 905  Q
    |||||| |||||| | |||| |||| ||||| | |||||||||||||| || ||| | |||||||||||||| ||||||  || | ||  |||||| |||    
T  20934326 taagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaacaatataccta 20934227  T
Q  906 atgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||| |||||| ||||   || | ||||||||||||||||||||    
T  20934226 atgccttaagattttacgtgaatatgtggtgtcaatctcactt 20934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 820 - 945
Target Start/End: Original strand, 9266725 - 9266850
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| |||  ||||||| |||||||||||  ||||| | | |||   |||||| ||||||||||||| |||    
T  9266725 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 9266824  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
    || ||| | |||||||||||||||||    
T  9266825 tgaatgaaaatgtggtgtcaatctca 9266850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 832 - 980
Target Start/End: Original strand, 9265297 - 9265445
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatg 931  Q
    ||||||| || ||| |||||| ||| |||||||| ||||| ||||| |||||| ||| |||   ||||||  |||||||||||| ||||| ||| |  ||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttttgaatgaaactg 9265396  T
Q  932 tggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    | |||||||||||| ||||  |||||||||||  ||||| | |||||||    
T  9265397 tagtgtcaatctcatttatagggtttctcttagacaaatgtaatgatcc 9265445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 820 - 980
Target Start/End: Complemental strand, 14240647 - 14240487
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| |||| || |||||||| |||||  ||| |||   |||||| || || | ||||| |||    
T  14240647 taatgtgacatgtgtgagttaaccttttacatttgacccaaaagtaaattttgagcaacatatatgtgagatgtccaatatacctgatatgttaagattt 14240548  T
Q  920 tggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    || ||| ||||||||||||||||||| || |  |||||||||||  ||||||| |||||||    
T  14240547 tgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatataatgatcc 14240487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 664 - 914
Target Start/End: Complemental strand, 37837759 - 37837506
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacattttt---accatgttgttcctcttatct 760  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| || |  |||||| |  | ||||| |||||||||   |||||||||| | | | | ||    
T  37837759 aatttactttctctcttctcataaaagaaaagaacaaagacatccataaatgaaacaaccgccaacccacattttttttaccatgttgtacttttgacct 37837660  T
Q  761 tatttttccatctcaacatatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaa 860  Q
    | ||| |  |||||| || ||||||||||  |  |||||  | |||||  | || ||| |||||||| || ||||| | |||||| ||| ||||||  ||    
T  37837659 tgtttgtttatctcaccagatcatagacacggtgaatcttacacttaaaagagatatgttaatgtgttatgtgtgatttaaacttatacgttggatgaaa 37837560  T
Q  861 gagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaa 914  Q
     |||| |||||||| || |||||||||| ||||  |||||||||||||| ||||    
T  37837559 aagtagatattgagaaacatataaatgagatgaccaatataactaatgtattaa 37837506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 50332044 - 50331969
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||||||| ||||||||||||||| ||||| |||||||   |||||| |||||| |||| ||||||| ||||||    
T  50332044 ttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacat 50331969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 664 - 718
Target Start/End: Complemental strand, 12746005 - 12745951
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaa 718  Q
    |||||||||||| | ||||| | ||||||||||||||||||| ||||||||||||    
T  12746005 aatttactttctcttttctcttgaaagaaaggaacaaagacatccctctatgaaa 12745951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 14044292 - 14044358
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacattt 111  Q
    ||||||||||||||| ||||| ||||| ||  | ||||||||||| ||||||||||||| |||||||    
T  14044292 atgttaatgtgtcaagtgtgatttaaagttccatattggatgcaatagtaaatgttgaacaacattt 14044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 20935082 - 20934940
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatataccc 133  Q
    ||||| |||| ||||||||||||||  ||||| ||||||||| | |||| |||||| |||| ||| ||| |||||||| || ||||| | ||||||||      
T  20935082 ttaatggagagatgttaatgtgtcaggtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgactcatatacat 20934984  T
Q  134 attgctttaggattttgggtgaagaagtgacgtcaatctcactt 177  Q
    | |||||| ||| ||||   ||||| |||| || ||||||||||    
T  20934983 aatgctttcggactttgaaagaagatgtgatgtgaatctcactt 20934940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 820 - 874
Target Start/End: Original strand, 431984 - 432038
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgag 874  Q
    |||||||||| |||||||| ||| ||| ||||||||| ||||||||||| |||||    
T  431984 taatgtgtcaattgtgagttaaaattcgacattggatgcaagagtatatgttgag 432038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 664 - 749
Target Start/End: Original strand, 36096720 - 36096804
Alignment:
Q  664 aatttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcaca-tttttaccatgttgt 749  Q
    |||||||||||| | ||||| | |||||||||||||||||||  |||||||||||   ||||||||| ||| |||||||||||||||    
T  36096720 aatttactttctcttttctcttgaaagaaaggaacaaagaca-tcctctatgaaactatcaccaact-acattttttaccatgttgt 36096804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 52754740 - 52754790
Alignment:
Q  408 aatgtagacttgttgtgctgagttgacaaaatacatatgtattagacattt 458  Q
    ||||||||  |||| |||||||||| |||||||||||| ||||||||||||    
T  52754740 aatgtagatgtgttatgctgagttggcaaaatacatatttattagacattt 52754790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 36097924 - 36097993
Alignment:
Q  33 attaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||| ||||| |||||| |||||||||||| | ||||| ||| ||||| ||||||| |||| |||||||    
T  36097924 attaagagagatatgttattgtgtcaattgtaatttaaattttcacattagatgcaaaagtagatgttga 36097993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 6e-46; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 42080959 - 42080767
Alignment:
Q  26 agagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattc 125  Q
    ||||||| ||||| |||| || ||||||||||| | |||| ||||||||||||||| |||||||||||| ||||||| |||||| |||| |||||||| |    
T  42080959 agagtctcttaatggagagatattaatgtgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag-gagattatcc 42080861  T
Q  126 atatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaat--gatgatacaaccaatgta 217  Q
    ||||||| | |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  |||||| ||| |||||||    
T  42080860 atatacctaatgctttaggactttgggtgaagaagtgatgtcgatctcacttgtgttgttgctctttaactaatacgatgatgcaaacaatgta 42080767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 45406698 - 45406909
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatataccc 133  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||| | ||||||| |||||| |||| |||||||| ||||||||     
T  45406698 ttaatggagaaatgttaatgtgtcaattgtgagttaaaatttgacatttgatgtaagaggagatgttgagaaacatatgagggagattatccatatacct 45406797  T
Q  134 attgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgacta--atgatgataca-accaatgtaggtttccatggaa 230  Q
    | |||||||||| ||||| ||||||||||| ||| |||||||   |||||||||||||||||||  ||||||| |||  |||| ||||||| |||| |||    
T  45406798 aatgctttaggactttggttgaagaagtgatgtcgatctcac--atgttgttgctctttgactaatatgatgagacatcccaacgtaggttcccatagaa 45406895  T
Q  231 atcgcaaaattata 244  Q
     |||||| ||||||    
T  45406896 gtcgcaacattata 45406909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 832 - 975
Target Start/End: Complemental strand, 17474730 - 17474587
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatg 931  Q
    ||||||| |||||||||| || ||| |||||||||||||||| ||| ||||   ||| |||  ||||||| ||||| |||| || ||| |||||||||||    
T  17474730 tgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggtttcggatggagatg 17474631  T
Q  932 tggtgtcaatctcacttatcaggtttctcttatccaaatatgat 975  Q
    ||||||| |||| |||| |  |||||||||||| | ||||||||    
T  17474630 tggtgtccatcttacttgtggggtttctcttattcgaatatgat 17474587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 832 - 975
Target Start/End: Original strand, 17578484 - 17578627
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatg 931  Q
    ||||||| |||||||||| || ||| |||||||||||||||| ||| ||||   ||| |||  ||||||| ||||| |||| || ||| |||||||||||    
T  17578484 tgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatcttcaggtttcggatggagatg 17578583  T
Q  932 tggtgtcaatctcacttatcaggtttctcttatccaaatatgat 975  Q
    ||||||| |||| |||| |  |||||||||||| | ||||||||    
T  17578584 tggtgtccatcttacttgtggggtttctcttattcgaatatgat 17578627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 777 - 915
Target Start/End: Complemental strand, 42079078 - 42078938
Alignment:
Q  777 catatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttc--tacattggatccaagagtatatattgag 874  Q
    |||||||||||   | |||||||| |  ||||||  |||||| ||||||||||| ||||||| |||||||  |||||| ||| |||||||| ||||||||    
T  42079078 catatcatagattcaaacaatctcacagttaaggaagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgag 42078979  T
Q  875 caagatataaatgaaatgataaatataactaatgtcttaag 915  Q
    ||| || ||| ||| ||||| |||||| || ||||||||||    
T  42078978 caacatgtaagtgagatgatcaatatatcttatgtcttaag 42078938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 832 - 964
Target Start/End: Complemental strand, 17510214 - 17510082
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatg 931  Q
    ||||||| |||||||||| || ||| |||||||||||||||| ||| ||||   ||| |||   |||||| ||||| |||| || ||| |||||||||||    
T  17510214 tgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggtttcggatggagatg 17510115  T
Q  932 tggtgtcaatctcacttatcaggtttctcttat 964  Q
    ||||||| |||| |||| |  ||||||||||||    
T  17510114 tggtgtccatcttacttgtggggtttctcttat 17510082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 832 - 964
Target Start/End: Original strand, 17543000 - 17543132
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatg 931  Q
    ||||||| |||||||||| || ||| |||||||||||||||| ||| ||||   ||| |||   |||||| ||||| |||| || ||| |||||||||||    
T  17543000 tgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatcttcaggtttcggatggagatg 17543099  T
Q  932 tggtgtcaatctcacttatcaggtttctcttat 964  Q
    ||||||| |||| |||| |  ||||||||||||    
T  17543100 tggtgtccatcttacttgtggggtttctcttat 17543132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 840 - 943
Target Start/End: Complemental strand, 4110415 - 4110312
Alignment:
Q  840 aaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtca 939  Q
    ||||| |||||||| || ||| |||||||||||||||| || ||| ||| ||||| ||| ||  |||| ||||||| |||| |||||| |||||||||||    
T  4110415 aaactactacattgaatgcaatagtatatattgagcaacatgtaagtgagatgatcaatttacataatatcttaaggttttagatggaaatgtggtgtca 4110316  T
Q  940 atct 943  Q
    ||||    
T  4110315 atct 4110312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 820 - 945
Target Start/End: Complemental strand, 38788213 - 38788088
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||| ||| ||||||| || ||| |||||| ||  ||| |||| ||||||||||| |||||| ||| |||   |||||| || |||||||||  |||    
T  38788213 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaaattt 38788114  T
Q  920 tggatggagatgtggtgtcaatctca 945  Q
    || ||| |||||||||||||||||||    
T  38788113 tgaatgaagatgtggtgtcaatctca 38788088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 43989683 - 43989779
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatatac 131  Q
    ||||| |||| ||||||||||||||| ||||| ||||||||| | |||| |||||| |||| ||| ||| |||||||| || ||||| ||||||||||    
T  43989683 ttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgattcatatac 43989779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 833 - 980
Target Start/End: Original strand, 6202346 - 6202493
Alignment:
Q  833 gtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgt 932  Q
    |||||| || ||| |||||| ||| |||||||| ||||| ||||| |||||| ||| |||   ||||||  |||||||||||| ||||| ||| | |||     
T  6202346 gtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattttgaatgaaaatgc 6202445  T
Q  933 ggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
     |||||||||||| ||||  |||||||||||  ||||| | |||||||    
T  6202446 agtgtcaatctcatttatagggtttctcttagacaaatctaatgatcc 6202493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 22528933 - 22528981
Alignment:
Q  61 tgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    ||||| ||||||||| |||||| ||||||||||||||||||| ||||||    
T  22528933 tgtgagttaaaattttacattgtatgcaagagtaaatgttgagaaacat 22528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 777 - 838
Target Start/End: Complemental strand, 15464457 - 15464396
Alignment:
Q  777 catatcatagacatagacaatctcgcccttaagggtgagatgataatgtgtcatttgtgagt 838  Q
    ||||||||||||||||| | |||| | |||||||  |||||| ||||||||||| |||||||    
T  15464457 catatcatagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgagt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 897 - 938
Target Start/End: Original strand, 45100256 - 45100297
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtc 938  Q
    ||||||||||||||||||  |||| |||||||||||||||||    
T  45100256 atataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 93; Significance: 9e-45; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 31011 - 31194
Alignment:
Q  15 cacagacacagagagtctattaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgag 114  Q
    |||||||||  ||||||| ||||| |||| || ||||| ||||| | |||| ||||||||||||||| |||||||||||| ||||||| |||||| ||||    
T  31011 cacagacacgaagagtctcttaatggagagatattaatttgtcagtcgtgagttaaaatttgacattagatgcaagagtagatgttgagaaacatatgag 31110  T
Q  115 agagattattcatatacccattgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaat 199  Q
     |||||||| |||||||| | |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  31111 -gagattatccatatacctaatgctttaggactttgggtgaagaagtgatgtcgatctcacttgtgttgttgctctttaactaat 31194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 795 - 980
Target Start/End: Complemental strand, 31089639 - 31089453
Alignment:
Q  795 aatctcgcccttaagggtgagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgat 894  Q
    |||||| | |||||||| || ||| ||||||||||| ||| ||| ||| |||||||||||||  |||||||||| |||||||| ||||||  || |||||    
T  31089639 aatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgat 31089540  T
Q  895 aaatataactaatgtcttaagtttttg-gatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
     |||||| ||||||||| ||||||||  | ||  ||||||||||||||||||||| | ||||||||||||   |||| |||||||||    
T  31089539 caatatacctaatgtctgaagtttttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttagtaaaatgtgatgatcc 31089453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 43387185 - 43387038
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatataccc 133  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||  |||||| |||||| |||| ||||||| |||||| | || || || | || |||| |     
T  43387185 ttaacagagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatct 43387086  T
Q  134 attgctttaggattttgggtgaagaagtgacgtcaatctcacttgtgt 181  Q
    | ||  ||| ||||||||||||||  |||| |||||||| ||||||||    
T  43387085 aatgtcttaagattttgggtgaagttgtgatgtcaatcttacttgtgt 43387038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 16853617 - 16853756
Alignment:
Q  40 gagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatatacccattgct 139  Q
    |||| ||||||| ||||||||||||| | ||| ||| | ||||||||||  ||||||| ||||||||||| | || ||||| ||  ||||||  | ||||    
T  16853617 gagagatgttaaagtgtcaattgtgactcaaagtttcaaattggatgca--agtaaatcttgaaaaacatataagtgagatgatcaatatacataatgct 16853714  T
Q  140 ttaggattttgggtgaagaagtgacgtcaatctcacttgtgt 181  Q
    ||| | |||||||||| || |||  |||||||||| ||||||    
T  16853715 ttaaggttttgggtgatgatgtggtgtcaatctcagttgtgt 16853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 3981635 - 3981695
Alignment:
Q  43 aaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaa 103  Q
    |||||||||||||| || ||| ||||||| ||| |||||| ||||||||||| ||||||||    
T  3981635 aaatgttaatgtgtaaagtgtaaattaaagttttacattgaatgcaagagtagatgttgaa 3981695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 22636404 - 22636336
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||| |||| |||||||| | |||| ||||| |||||||||||| ||| ||||||||||| |||||||    
T  22636404 ttaatggagagatgttaatttttcaagtgtgagttaaaatttgactttgaatgcaagagtagatgttga 22636336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 31090385 - 31090337
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagt 93  Q
    ||||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  31090385 atgttaatgtgtcaattatgaattaaaattttacaatgtatgcaagagt 31090337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 47783158 - 47783222
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    ||||||||||||||| ||||| ||||| ||| ||||||| ||||||||||| |||| || |||||    
T  47783158 atgttaatgtgtcaagtgtgagttaaagtttcacattggctgcaagagtaattgtttaacaacat 47783222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 948
Target Start/End: Complemental strand, 43387177 - 43387042
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    |||||| ||||||||||  ||||||| ||| ||  |||||| || ||| |||| || ||||| || |||||| ||||||||    |||| ||||||||||    
T  43387177 gagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtctt 43387078  T
Q  913 aagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||| |||||| || || |||| ||||||||| ||||    
T  43387077 aagattttgggtgaagttgtgatgtcaatcttactt 43387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 897 - 940
Target Start/End: Complemental strand, 50391977 - 50391934
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 940  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  50391977 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 50391934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 820 - 874
Target Start/End: Original strand, 16852900 - 16852954
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgag 874  Q
    ||||||||||| ||| ||| ||||||||||||||||  ||| |||||||||||||    
T  16852900 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgag 16852954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 667 - 748
Target Start/End: Complemental strand, 22635782 - 22635700
Alignment:
Q  667 ttactttctatcttctcattaaagaaaggaacaaagacacccctctatgaaatagtcaccaactcacat-ttttaccatgttg 748  Q
    ||||||| ||| ||||||  |||||||||||||||||||||| | ||| |||  | ||| ||||||||| |||||||||||||    
T  22635782 ttactttttattttctcacgaaagaaaggaacaaagacacccttgtataaaaccgccacaaactcacattttttaccatgttg 22635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 20306818 - 20306722
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatatac 131  Q
    ||||| |||| ||||||||||||||| ||||| ||||||||| | |||| |||||| |||| ||  ||| |||||||| || ||||| | ||||||||    
T  20306818 ttaatggagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagat-atgagaaacatttaagtgagatgactcatatac 20306722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 873
Target Start/End: Original strand, 27342220 - 27342261
Alignment:
Q  832 tgtgagtaaaacttctacattggatccaagagtatatattga 873  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  27342220 tgtgagttaaacttctacattggatgcaatagtatatattga 27342261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 813 - 980
Target Start/End: Original strand, 5122 - 5288
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    ||||||| ||||||||||  |||||| |||| |||||||||||| ||||| |||| ||||| ||| |||||| |||| |||  |||||| ||||||||||    
T  5122 gagatgagaatgtgtcatgcgtgagttaaacatctacattggatgcaagaatatacattgaacaacatataagtgaagtgaccaatatacctaatgtctt 5221  T
Q  913 aagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatcc 980  Q
    |   |||||| || | ||||||||||||| ||| || |  |||||||||||  ||||| |||||||||    
T  5222 actattttgggtgaatatgtggtgtcaatatcatttgt-tggtttctcttagtcaaatgtgatgatcc 5288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 3e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 31737288 - 31737226
Alignment:
Q  47 gttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| |||||    
T  31737288 gttaatgtgtcaattgtgagttaaaatttcacattggatgcaagagtagatgttgaacaacat 31737226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 820 - 943
Target Start/End: Original strand, 24397925 - 24398047
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||||||| || |||||||||| ||   |  |||||||||||||||| |||||||||| ||||  |||||| |||||||| |||| |||    
T  24397925 taatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatctaatgtcgtaagattt 24398023  T
Q  920 tggatggagatgtggtgtcaatct 943  Q
    ||| || ||| ||| |||||||||    
T  24398024 tgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 820 - 946
Target Start/End: Original strand, 1599850 - 1599976
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||| | | |||||| ||||||  ||  ||||||| ||||||||||| |||||||||| ||||  |||||| | ||||||||||| |||    
T  1599850 taatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatatatccaatgtcttaaggttt 1599949  T
Q  920 tggatggagatgtggtgtcaatctcac 946  Q
    || ||  ||||||||||| ||| ||||    
T  1599950 tgaatttagatgtggtgtgaatttcac 1599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 850 - 963
Target Start/End: Original strand, 24175782 - 24175895
Alignment:
Q  850 attggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactta 949  Q
    ||||||| |||||||||||||||||||| |||||||||| || || |||||   |||| ||||||| |||||| |  | ||||||||||||||| | ||     
T  24175782 attggatgcaagagtatatattgagcaacatataaatgagataatcaatatgcataatatcttaagattttgggtacatatgtggtgtcaatcttagttg 24175881  T
Q  950 tcaggtttctctta 963  Q
    |  |||||||||||    
T  24175882 tggggtttctctta 24175895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 1599683 - 1599758
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacat 109  Q
    |||||||||| ||||||||||||||| ||||| |||||||   |||||| |||||| |||| ||||||| ||||||    
T  1599683 ttaatagagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagaaacat 1599758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 879 - 946
Target Start/End: Complemental strand, 18090004 - 18089937
Alignment:
Q  879 atataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcac 946  Q
    |||||| ||| ||||  |||||| |||||| |||||| |||||| || ||||||||||||||||||||    
T  18090004 atataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcac 18089937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 879 - 945
Target Start/End: Original strand, 2970425 - 2970491
Alignment:
Q  879 atataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctca 945  Q
    |||||| |||||||| | ||||| || |||||||||  ||||||||  |||||||||||||||||||    
T  2970425 atataagtgaaatgacacatatacctcatgtcttaaaattttggataaagatgtggtgtcaatctca 2970491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 24360218 - 24360161
Alignment:
Q  45 atgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||||||||||||||| ||| ||||| ||  ||| |||||||||||||| |||||||    
T  24360218 atgttaatgtgtcaattttgacttaaagttccacaatggatgcaagagtagatgttga 24360161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 820 - 943
Target Start/End: Original strand, 30848 - 30970
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttt 919  Q
    ||||||||||| ||||||| || |||||||||| | | | | |||||||||||||||| |||||||||| ||||  |||||| |||||||| |||| |||    
T  30848 taatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatatctaatgtcataagattt 30946  T
Q  920 tggatggagatgtggtgtcaatct 943  Q
    ||| || ||| ||| |||||||||    
T  30947 tgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 822 - 948
Target Start/End: Original strand, 2 - 128
Alignment:
Q  822 atgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttg 921  Q
    |||| |||| ||||||| |||||||||||||| || ||| |||||||||||||||| ||||||  || | ||  |||||| |||||| |||||| ||||     
T  2 atgtttcatgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagatttta 101  T
Q  922 gatggagatgtggtgtcaatctcactt 948  Q
      |  ||||||||||||||||||||||    
T  102 cgtaaagatgtggtgtcaatctcactt 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 211
Target Start/End: Complemental strand, 38016012 - 38015839
Alignment:
Q  40 gagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagattattcatatacccattgct 139  Q
    |||| ||||||||||||||| ||||| |||||||   |||||| |||||| |||| |||||||  ||||| | || ||||| | ||||||| | | ||      
T  38016012 gagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgac 38015913  T
Q  140 ttaggattttgggtgaagaagtgacgtcaatctcacttgtgttgttgctctttgactaatg--atgatacaacc 211  Q
    ||| ||||||||||||||  |||| |||||||||||||||||  ||||| || | ||||||  |||||||||||    
T  38015912 ttaagattttgggtgaagttgtgatgtcaatctcacttgtgtgcttgcttttagcctaatgttatgatacaacc 38015839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 813 - 948
Target Start/End: Original strand, 9048629 - 9048753
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    |||||| |||||||| || ||||||| ||||||||| || |||| ||| |||| |||||||||||||||           ||  ||||| |||||| |||    
T  9048629 gagatgttaatgtgttatatgtgagttaaacttctatatcggatgcaaaagtagatattgagcaagata-----------attgatatatctaatgcctt 9048717  T
Q  913 aagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||| ||||||||| ||||||||||||||||||||||    
T  9048718 aagattttggatgaagatgtggtgtcaatctcactt 9048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 840 - 937
Target Start/End: Complemental strand, 38012936 - 38012839
Alignment:
Q  840 aaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgt 937  Q
    |||||||||||||| ||  ||||||| ||||||||||| |||||| ||||||||  |||||| | ||||| ||| | ||||| ||  |||||||||||    
T  38012936 aaacttctacattgtatgtaagagtagatattgagcaacatataactgaaatgactaatatacccaatgttttatggttttgaatttagatgtggtgt 38012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 948
Target Start/End: Complemental strand, 38016010 - 38015875
Alignment:
Q  813 gagatgataatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatataactaatgtctt 912  Q
    |||||| ||||||||||  ||||||| ||| |   |||||| || ||| |||| || |||||||| |||||| ||| ||||   ||||| |||||| |||    
T  38016010 gagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactcatatatctaatgactt 38015911  T
Q  913 aagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||| |||||| || || |||| ||||||||||||||    
T  38015910 aagattttgggtgaagttgtgatgtcaatctcactt 38015875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 33012193 - 33012124
Alignment:
Q  33 attaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttga 102  Q
    ||||| ||||| |||||| |||||||||||| | ||||| ||  ||||| |||||||||||| |||||||    
T  33012193 attaagagagatatgttattgtgtcaattgtaatttaaagttccacattagatgcaagagtagatgttga 33012124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 873 - 978
Target Start/End: Complemental strand, 45673 - 45568
Alignment:
Q  873 agcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatat 972  Q
    ||||| |||||||||| |||| ||||||| ||||||||||||| |||||| || |||| ||||||  ||||||||| |  |||||||||||  ||||| |    
T  45673 agcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgt 45574  T
Q  973 gatgat 978  Q
    ||||||    
T  45573 gatgat 45568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 873 - 978
Target Start/End: Original strand, 153114 - 153219
Alignment:
Q  873 agcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatat 972  Q
    ||||| |||||||||| |||| ||||||| ||||||||||||| |||||| || |||| ||||||  ||||||||| |  |||||||||||  ||||| |    
T  153114 agcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctcttaatcaaatgt 153213  T
Q  973 gatgat 978  Q
    ||||||    
T  153214 gatgat 153219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 867 - 963
Target Start/End: Complemental strand, 10663 - 10567
Alignment:
Q  867 atattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctctta 963  Q
    ||||||||||| |||||| ||| ||||  || ||| | |||||| |||||||||||||| |||||| ||||||||||||||| |  |||||||||||    
T  10663 atattgagcaacatataagtgagatgacgaacataccaaatgtcctaagtttttggatgaagatgtagtgtcaatctcacttgtagggtttctctta 10567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 897 - 948
Target Start/End: Complemental strand, 236 - 185
Alignment:
Q  897 atataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    ||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  236 atatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 804 - 915
Target Start/End: Complemental strand, 12645 - 12532
Alignment:
Q  804 cttaagggtgagatgataatgtgtcatttgtgagtaaaacttcta--cattggatccaagagtatatattgagcaagatataaatgaaatgataaatata 901  Q
    |||||||  |||||| ||||||||||| ||||||| ||| |||||  |||| ||| |||||||| ||||||||||| || ||| ||| ||||| ||||||    
T  12645 cttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagtgagatgatcaatata 12546  T
Q  902 actaatgtcttaag 915  Q
     || ||||||||||    
T  12545 tcttatgtcttaag 12532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 820 - 901
Target Start/End: Complemental strand, 32542 - 32461
Alignment:
Q  820 taatgtgtcatttgtgagtaaaacttctacattggatccaagagtatatattgagcaagatataaatgaaatgataaatata 901  Q
    ||||||||||  ||||| | |||||||||||||  ||  ||||||||||||||||||| |||||| ||| |||| |||||||    
T  32542 taatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaaatata 32461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 862 - 945
Target Start/End: Original strand, 12236 - 12319
Alignment:
Q  862 agtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctca 945  Q
    |||| ||||||||||| |||||| ||| |||   |||||| || |||||||||| ||||| ||| |||||||||| ||||||||    
T  12236 agtagatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctca 12319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1782 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 862 - 948
Target Start/End: Original strand, 1277 - 1363
Alignment:
Q  862 agtatatattgagcaagatataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    |||||||||||||||| ||||||  || | ||  |||||| |||||| |||||| ||||   || ||||||||||||||||||||||    
T  1277 agtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagattttacgtgaagatgtggtgtcaatctcactt 1363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 1849 - 1934
Alignment:
Q  34 ttaatagagaaatgttaatgtgtcaattgtgaattaaaatttgacattggatgcaagagtaaatgttgaaaaacatttgagagagat 120  Q
    ||||| |||| ||||||||||||||| ||||| ||||||||| | |||| |||||| |||| ||| ||| |||||||| || |||||    
T  1849 ttaattgagagatgttaatgtgtcaagtgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagat 1934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 948
Target Start/End: Complemental strand, 183 - 114
Alignment:
Q  879 atataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    |||||| ||| |||| | |||||||||||| ||||| ||||||||||  |||||||||| ||| ||||||    
T  183 atataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcactt 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 948
Target Start/End: Complemental strand, 8998 - 8929
Alignment:
Q  879 atataaatgaaatgataaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcactt 948  Q
    |||||| ||| |||| | |||||||||||| ||||| ||||||||||  |||||||||| ||| ||||||    
T  8998 atataagtgagatgacacatataactaatgccttaaatttttggatgatgatgtggtgttaatttcactt 8929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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