View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_high_10 (Length: 407)
Name: NF3890_high_10
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Complemental strand, 37197199 - 37196824
Alignment:
| Q |
14 |
agaggctgcttgacatgaacggtcatttaaagtaaaaggcccaatttcataaggactgtgggccatattcacctcaactcatgggtccagatatagtaaa |
113 |
Q |
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| T |
37197199 |
agaggctgcttgacatgaacggtcatttaaagtaaaaggcccaatttcataaggactgtgggccatattcacctcaactcatgggtccagatatagtaaa |
37197100 |
T |
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| Q |
114 |
tgaccatagtccatttttaaaaagtcatcaatgtctgcatttgtctctaaattcagcacttaatttctagtattaattttctatattaaatttggagaag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37197099 |
tgaccatagtccatttttaaaaagtcatcaatgtctgcatttgtctctaagttcagcacttaatttctagtattaattttctatattaaatttggagaag |
37197000 |
T |
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| Q |
214 |
aaagaaataaaggagaaaatataaaaaatgccattatgattatgaggattttctttttgtcaatattttgggtgggtaagttctgttagttgaaccataa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
37196999 |
aaagaaataaaggagaaaatataaaaaatgccattatgattatgaggattttctttttgtcaatattttgggtgggttagttctgttagttggaccataa |
37196900 |
T |
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| Q |
314 |
tcttatttattaagcaaaaagtataagaatcatctagatgtttagactttttgtgtttgttgtctaatgtgaattt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37196899 |
tcttatttattaagcaaaaagtataagaatcatctagatgtttagactttttgtgtttgttgtctaatgtgaattt |
37196824 |
T |
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