View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3890_high_24 (Length: 235)

Name: NF3890_high_24
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3890_high_24
NF3890_high_24
[»] chr6 (9 HSPs)
chr6 (17-219)||(11756703-11756905)
chr6 (17-219)||(12093016-12093218)
chr6 (17-198)||(11738814-11738995)
chr6 (17-166)||(11672929-11673078)
chr6 (17-160)||(11663866-11664009)
chr6 (17-161)||(11619045-11619189)
chr6 (19-166)||(11631037-11631184)
chr6 (17-160)||(11709478-11709621)
chr6 (26-137)||(31526364-31526475)
[»] scaffold0019 (1 HSPs)
scaffold0019 (17-166)||(7915-8064)
[»] chr1 (1 HSPs)
chr1 (17-157)||(44812470-44812610)
[»] scaffold0196 (1 HSPs)
scaffold0196 (19-149)||(13438-13568)
[»] chr8 (1 HSPs)
chr8 (83-134)||(5313896-5313947)
[»] chr5 (1 HSPs)
chr5 (49-128)||(14372704-14372783)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 11756703 - 11756905
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11756703 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcaaaatgctgatgtatatctcttggatgatcctttcag 11756802  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataaggttcattctttattgaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||| |||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  11756803 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatcgattctacctttctttacaaactgtgattacatcataagattcattctttattgaaa 11756902  T
Q  217 aat 219  Q
    |||    
T  11756903 aat 11756905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 12093218 - 12093016
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12093218 agagaggtgttaatctaagtgggggtcaaaagcagcgaattcaacttgctcgagctctttatcagaattctgatgtatatctcttggatgatcctttcag 12093119  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataaggttcattctttattgaaa 216  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||    
T  12093118 tgctgttgatgcgcacactgcaaaaaaattgtttaatgtaatcacttcttcctttcttaaaaaaccgcgattacatcataagattcattctttattgaaa 12093019  T
Q  217 aat 219  Q
    |||    
T  12093018 aat 12093016  T

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Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 11738995 - 11738814
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||  | |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| |||||    
T  11738995 agagaggagttaacttgagtgggggtcaaaagcaacgaattcaacttgctcgtgctctttatcagaatgctgacatatatctcttggatgatccattcag 11738896  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataag 198  Q
    ||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||||| | ||||||| |||  ||||||||    
T  11738895 tgctgttgacgcgcacactgcaactaatttgttcaatgtaatgaattcttcctttcttcataaactgcaattgtatcataag 11738814  T

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Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 11673078 - 11672929
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||| ||||||| |||||||| ||  |||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| || ||    
T  11673078 agagaggagttaatttaagtggaggtcaaaaacaacgaattcaacttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttag 11672979  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt 166  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  11672978 tgctgttgatgcgcatactgcaaaaaaattgttcaatgtaatgacatctt 11672929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 11663866 - 11664009
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||  ||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| || ||    
T  11663866 agagaggagttaacttaagtggaggtcagaagcagcgaattcaactagctcgtgctctttatcagaatgctgatatatatctcttggatgatccatttag 11663965  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatga 160  Q
    |||||||||||| || |||||||||| |||||| ||||||||||    
T  11663966 tgctgttgatgcacatactgcaaaaagtttgtttaatgtaatga 11664009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 11619045 - 11619189
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||| |||| || |||||||||||  |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| || ||    
T  11619045 agagaggagttaatttaagcggaggtcaaaagcaacgaattcaacttgctcgcgctctttataagaatgctgatatatatcttttggatgatccatttag 11619144  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgac 161  Q
    ||| |||||||| || ||||||||||||||||| |||||||||||    
T  11619145 tgccgttgatgcacatactgcaaaaaatttgttaaatgtaatgac 11619189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 11631184 - 11631037
Alignment:
Q  19 agaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtg 118  Q
    ||||| |||||| ||||||| |||||||| ||| |||||||||| ||||| ||||||||||||||||||||  ||||||| ||||||||||| || || |    
T  11631184 agaggagttaatttaagtggaggtcaaaaacagcgaattcaactagctcgtgctctttatcagaatgctgacatatatctattggatgatccatttagcg 11631085  T
Q  119 ctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt 166  Q
    |||||||||| || |||||||||||||||||  |||||||||| ||||    
T  11631084 ctgttgatgcacatactgcaaaaaatttgtttgatgtaatgacatctt 11631037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 11709621 - 11709478
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||| |||| || ||||| |||||| |||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||| || ||    
T  11709621 agagaggagttaatttaagcggaggtcagaagcagcgaattcaactagctcgtgctctttatgagaacgctgatatatatctcttggatgatccgtttag 11709522  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatga 160  Q
    |||||||||||| || || ||||||| |||||||||||||||||    
T  11709521 tgctgttgatgcacatacggcaaaaagtttgttcaatgtaatga 11709478  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 31526475 - 31526364
Alignment:
Q  26 ttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtgctgttga 125  Q
    |||| |||||||| || |||||||| || |||||||| ||||||||  ||||  |  |||||||| | |||||| | ||||| |||||||| || |||||    
T  31526475 ttaacctaagtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctccttgatgaccctttcagcgcagttga 31526376  T
Q  126 tgcgcacactgc 137  Q
     |||||||||||    
T  31526375 cgcgcacactgc 31526364  T

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Target: scaffold0019 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 8064 - 7915
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| || |||||||| || ||    
T  8064 agagaggagttaatttaagtggaggtcaaaagcagcgaattcaacttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttag 7965  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt 166  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||| ||||    
T  7964 tgctgttgatgcgcatactgcgaaaaatttgtttaatgtaatgacatctt 7915  T

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Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 44812470 - 44812610
Alignment:
Q  17 agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag 116  Q
    ||||||| |||||  ||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  44812470 agagaggggttaacttaagtggaggtcagaagcagcgaattcaacttgctcgtgctctttatcagaatgctgatatatatatcttggatgatccattcag 44812569  T
Q  117 tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaa 157  Q
    |||||||||||| || || || | ||||||||| |||||||    
T  44812570 tgctgttgatgcacaaacagccacaaatttgtttaatgtaa 44812610  T

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Target: scaffold0196 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 13438 - 13568
Alignment:
Q  19 agaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtg 118  Q
    ||||| || ||| ||||||| ||||| |||||| |||||||||| ||||| ||| ||||| ||||||||||| ||||||| ||||||||||| || ||||    
T  13438 agaggagtaaatttaagtggaggtcagaagcagcgaattcaactggctcgtgctttttatgagaatgctgatatatatctattggatgatccatttagtg 13537  T
Q  119 ctgttgatgcgcacactgcaaaaaatttgtt 149  Q
    |||||||||| || |||||||| || |||||    
T  13538 ctgttgatgctcatactgcaaagaaattgtt 13568  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 5313896 - 5313947
Alignment:
Q  83 atgctgatgtatatctcttggatgatcctttcagtgctgttgatgcgcacac 134  Q
    |||||||| | |||||| | |||||||||||||||||||||||||| |||||    
T  5313896 atgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacac 5313947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 14372704 - 14372783
Alignment:
Q  49 cagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtgctgttgatgc 128  Q
    |||||||| ||| ||||||| |||||||| ||  |||||||| ||||||| || ||||||||||| ||||| || |||||    
T  14372704 cagagaatacaaattgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtgccgtggatgc 14372783  T

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