View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_high_8 (Length: 506)
Name: NF3890_high_8
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Original strand, 54302593 - 54303070
Alignment:
| Q |
12 |
aattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttcagaaatgtcttcatcat |
111 |
Q |
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| T |
54302593 |
aattcttatggccaaaaattcatcaatcgatccatctgtcaaagaaaataaattatttccaattttcaaattgatttgagttaagaaatgtcttcatcat |
54302692 |
T |
|
| Q |
112 |
ttgatgcactccaaaaacaatcagctgccgtagtgataatatagacttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
211 |
Q |
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| T |
54302693 |
ttgatgcactccaaaaacaatcagctgccgtagtgataatatggacttcaatacctcttaaagccaaatgatccgcaacaaattctctaatctgcagaca |
54302792 |
T |
|
| Q |
212 |
atttcaatgtaaagaaagagttaacacgatggcaactttagagcttgacattttgaaaaaagtaaagggtgatttcagaatnnnnnnngataaacctgta |
311 |
Q |
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| T |
54302793 |
atttgaatgtaaagaaagagctaacactatggcaactttagagcttgacattctgaaaaaagtaaagggtgatttcagaataaaaaaagataaacctgta |
54302892 |
T |
|
| Q |
312 |
tatatggagcaccgttcgccactttatacatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccgcgttcatctctcatggc |
411 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54302893 |
tatatggagcatcgttcgccactttatatatgacaatcatgacttcctgctgcttccgtaacatttacagaaaaatgtcaccacgttcatctctcatggc |
54302992 |
T |
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| Q |
412 |
cgatcgctgtatgtcatctgctaccactcataaacccctcaaattctacttcacaagtgcaatatcaccgtcaccatc |
489 |
Q |
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| T |
54302993 |
cgatcgctgtatatcatctgctaccactcataaacccctcaaattctacttcacaagtgcaatatcaccgccaccatc |
54303070 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 31306903 - 31306850
Alignment:
| Q |
158 |
ttcaatacctcttaaagccaaatgatctgcaacaaattctctaatctgcagaca |
211 |
Q |
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|||||||||||||| |||| || ||||||||||| ||||||||||||||||| |
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| T |
31306903 |
ttcaatacctcttagtgccatattttctgcaacaaaatctctaatctgcagaca |
31306850 |
T |
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