View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_high_9 (Length: 458)
Name: NF3890_high_9
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_high_9 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 443
Target Start/End: Original strand, 3638851 - 3639287
Alignment:
| Q |
6 |
caaaggacctctaatgctccaaaccacggaactgtgtgatgatgatataaggaactattcttttgccttttatttctgtcaatgtcacaattaacggcat |
105 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3638851 |
caaaggacctctaatgctccaaaccacggagctgtgtgatgatgacataaggaactatttttttgccttttatttctgtcaatgtcacaattaacggcat |
3638950 |
T |
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| Q |
106 |
agttagtttttggaagggttctctttattgaggactc-acaataaacttggttgttcttcttatcacaattaggggcatacaattttattaaagaatgac |
204 |
Q |
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| T |
3638951 |
agttagtttttggaagggttctctttattgaggactctacaataaacttggttgttcttcttatcacaattaggggcatacaattttattaaagaatgac |
3639050 |
T |
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| Q |
205 |
cgtgttagtgtcacaattggcggcatatactagtttttggaagggttcttcaaagataagtcaattttttcattcgccatggaggggtcttttttacatg |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639051 |
cgtgttagtgtcacaattggcggcatgtactagtttttggaagagttcttcaaagataagtcaattttttcattcgccatggaggggtcttttttacatg |
3639150 |
T |
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| Q |
305 |
aggttgtaagttaacttaaaaagcatagataattatcttcaaaattattctatcattctttttgtcaacaag-aaaaaagaagacattatggtnnnnnnn |
403 |
Q |
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| T |
3639151 |
aggttgtaagttaacttaaaaagcatagataattatcttcaaaattattttatcattctttttgtcaacaagaaaaaaagaagacattatggtaaaaaaa |
3639250 |
T |
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| Q |
404 |
gcttatacaaaaataatcttagttcccccttgttccatgt |
443 |
Q |
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| T |
3639251 |
gcttatacaaa---aatcttagtttccccttgttccatgt |
3639287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 3645269 - 3645423
Alignment:
| Q |
184 |
acaattttattaaagaatgaccgtgttagtgtcacaattggcggcatatactagtttttggaagggttct------tcaaagataagtcaattttttcat |
277 |
Q |
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| T |
3645269 |
acaattttattaaagaatgcccatgtcagtgtcacaattgccggcatatgctagtttttggaaaggtcctggtctttcaatattaactcaatgtttatat |
3645368 |
T |
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| Q |
278 |
tcgccatggaggggtcttttttacatgaggttgtaagttaacttaaaaagcatag |
332 |
Q |
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| T |
3645369 |
cttccatggaggggtcttttctacatgaggttgtaagttaacttaaaaagcatag |
3645423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 3645463 - 3645510
Alignment:
| Q |
335 |
aattatcttcaaaattattctatcattctttttgtcaacaagaaaaaa |
382 |
Q |
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| T |
3645463 |
aattatcttcaaaattattttttcattcttttagtcaacaaaaaaaaa |
3645510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 3649518 - 3649579
Alignment:
| Q |
188 |
ttttattaaagaatgaccgtgttagtgtcacaattggcggcatatactagtttttggaagggt |
250 |
Q |
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| T |
3649518 |
ttttactaaagaat-accgtgttagcatcacaattatcggcatatgctagtttttggaagggt |
3649579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 3657635 - 3657694
Alignment:
| Q |
188 |
ttttattaaagaatgaccgtgttagtgtcacaattggcggcatatactagtttttggaagg |
248 |
Q |
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| T |
3657635 |
ttttactaaagaat-accgtgtcagcgtcacaaatagcggcatacactagtttttggaagg |
3657694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 6 - 396
Target Start/End: Complemental strand, 7234 - 6842
Alignment:
| Q |
6 |
caaaggacctctaatgctccaaaccacggaactgtgtgatgatgatataaggaactattcttttgccttttatttctgtcaatgtcacaattaacggcat |
105 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7234 |
caaaggacctctaatgctccaaaccacggagctgtgtgatgatgacataaggaactatttttttgccttttatttctgtcaatgtcacaattaacggcat |
7135 |
T |
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| Q |
106 |
agttagtttttggaagggttctctttattgaggactc-acaataaacttggttgttcttcttatcacaattaggggcatacaattttattaaagaatgac |
204 |
Q |
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| T |
7134 |
agttagtttttggaagggttctctttattgaggactctacaataaacttggttgttcttcttatcacaattaggggcatacaattttattaaagaatgac |
7035 |
T |
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| Q |
205 |
cgtgttagtgtcacaattggcggcatatactagtttttggaagggttcttcaaagataagtcaattttttcattcgccatggaggggtcttttttacatg |
304 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7034 |
cgtgttagtgtcacaattggcggcatgtactagtttttggaagagttcttcaaagataagtcaattttttcattcgccatggaggggtcttttttacatg |
6935 |
T |
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| Q |
305 |
aggttgtaagttaacttaaaaagcatagataattatcttcaaaattattctatcattctttttgtcaacaagaa-aaaagaagacattatggt |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6934 |
aggttgtaagttaacttaaaaagcatagataattatcttcaaaattattttatcattctttttgtcaacaagaaaaaaagaagacattatggt |
6842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 10102847 - 10102905
Alignment:
| Q |
188 |
ttttattaaagaatgaccgtgttagtgtcacaattggcggcatatactagtttttggaag |
247 |
Q |
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| T |
10102847 |
ttttactaaagaat-accgtgtgagcgtcacaattagcggcatacactagtttttggaag |
10102905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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