View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_10 (Length: 510)
Name: NF3890_low_10
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 14 - 502
Target Start/End: Complemental strand, 30272137 - 30271649
Alignment:
| Q |
14 |
cagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgtatttgaatccaacctttttactctac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272137 |
cagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgtatttgaatccaacctttttactctac |
30272038 |
T |
|
| Q |
114 |
aatttagtgatggagttttctattgtcacaaagtttatgttacttataattggttcttcacattttccattaggtgactgataggatgatgcttaatgct |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272037 |
aatttagtgatggagttttctattgtcacaaagtttatgttacttataattggttcttcacattttccattaggtgactgataggatgatgcttaatgct |
30271938 |
T |
|
| Q |
214 |
ggcaatatctacccccacaacaccccaaacaccaaggaagcatactactacagaatgatctttgagaggttcttcccccaggcaagttaatcaatcaact |
313 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30271937 |
ggcaatatctacccccacaacaccccaaacaccaaggaagcatactactacagaatgatctttgagaggttcttcccccaggcaagttattcaatcaact |
30271838 |
T |
|
| Q |
314 |
cttcttaatcggttgtaatgatataagctttgtagcactgctacttcagattaaagatgtatatggtgtttgacacgtgacggtgttggccgctgacata |
413 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30271837 |
ctttttaatcggttgtaacgatataagctttgtagcactgctacttcagattaaaggtgtatatggtgtttgacacgtgatggtgttggccgctgacata |
30271738 |
T |
|
| Q |
414 |
tatgattacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtg |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30271737 |
tatgattacattcaatcacttctatattcttaaatcattactggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtg |
30271649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 157 - 340
Target Start/End: Original strand, 29360224 - 29360407
Alignment:
| Q |
157 |
ttataattggttcttcacattttccattaggtgactgataggatgatgcttaatgctggcaatatctacccccacaacaccccaaacaccaaggaagcat |
256 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29360224 |
ttataattggttcttgacattttccaataggtgactgatagaatgatgcttaatgctggcaatatctacccccacaacaccccaaacaccaaggaagcat |
29360323 |
T |
|
| Q |
257 |
actactacagaatgatctttgagaggttcttcccccaggcaagttaatcaatcaactcttcttaatcggttgtaatgatataag |
340 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| |
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| T |
29360324 |
actactatagaatgatctttgagaggttcttccctcaggcaagttaatcaatcaacacttcttaatttgttgtaaccatataag |
29360407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 29359376 - 29359515
Alignment:
| Q |
14 |
cagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgtatttgaatccaacctttttactctac |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
29359376 |
cagaaggaacaattcagtaatggtgttggttatagttggattgacgaccttaaagctcattgtgcaaaacatgta-ttgaatccaacctttttactctac |
29359474 |
T |
|
| Q |
114 |
aatttagtgatggagttttctattgtcacaaagtttatgtt |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||| |||| |
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| T |
29359475 |
aatttagtgatggatttttctattgtcacaaaatttgtgtt |
29359515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 502
Target Start/End: Original strand, 29360435 - 29360530
Alignment:
| Q |
407 |
tgacatatatgattacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagtatcaggtcgtatttggtgtttgtgtctgtg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||| |||| |
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|
| T |
29360435 |
tgacatatatgattacattcaatcacttttatattcttaaatcattactggtgtttacgtgtcggtatcagtttgtatttggtgtttgtgtttgtg |
29360530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 29587734 - 29587669
Alignment:
| Q |
407 |
tgacatatatgattacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagt |
472 |
Q |
| |
|
|||||||| || ||||||| ||||||||| || ||||||||| |||||||||||||||||| |||| |
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|
| T |
29587734 |
tgacatatgtggttacatttaatcacttccattttcttaaattattaccggtgtttacgtgacagt |
29587669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Original strand, 28735824 - 28735865
Alignment:
| Q |
413 |
atatgattacattcaatcacttctatattcttaaatcattac |
454 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
28735824 |
atataattacattcaatcacttctattttcttaaattattac |
28735865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 25964792 - 25964718
Alignment:
| Q |
14 |
cagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgta |
88 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||| | ||||||||||| |||| | |||||||||||||||||| |
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| T |
25964792 |
cagaaggaacagttcagtgatggagttggctatggctggattgatggaattaaggaccatgctgcaaaacatgta |
25964718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 25964570 - 25964510
Alignment:
| Q |
244 |
accaaggaagcatactactacagaatgatctttgagaggttcttcccccaggcaagttaat |
304 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||| ||||| |||| || ||||| |
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|
| T |
25964570 |
accaaagaagcatattactatagaatgatctttgagaggtttttccctcaggtaatttaat |
25964510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 39546017 - 39546063
Alignment:
| Q |
14 |
cagaaggaacaattcagtgatggtgttggttatagttggattgatgg |
60 |
Q |
| |
|
||||||||||| |||||||||||||| || || |||||||||||||| |
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|
| T |
39546017 |
cagaaggaacagttcagtgatggtgtcggatacagttggattgatgg |
39546063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 31652491 - 31652450
Alignment:
| Q |
418 |
attacattcaatcacttctatattcttaaatcattaccggtg |
459 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||| |
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|
| T |
31652491 |
attacattcaatcacttctattttcttaaattattatcggtg |
31652450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 456
Target Start/End: Complemental strand, 5071732 - 5071682
Alignment:
| Q |
406 |
ctgacatatatgattacattcaatcacttctatattcttaaatcattaccg |
456 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||| | ||||||| |
|
|
| T |
5071732 |
ctgacacatatgattacattcaatcacttgtattttcttaagttattaccg |
5071682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 469
Target Start/End: Original strand, 28478065 - 28478115
Alignment:
| Q |
419 |
ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtc |
469 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||||| ||||| |||||||| |
|
|
| T |
28478065 |
ttacattcaatcacttctatttttttaaattattacgggtgtctacgtgtc |
28478115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 18374267 - 18374319
Alignment:
| Q |
408 |
gacatatatgattacattcaatcacttctatattcttaaatcattaccggtgt |
460 |
Q |
| |
|
||||||||||||| ||||||||||| | || ||||||||| ||||||||||| |
|
|
| T |
18374267 |
gacatatatgattgcattcaatcacattcattttcttaaattattaccggtgt |
18374319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 465
Target Start/End: Complemental strand, 22556280 - 22556234
Alignment:
| Q |
419 |
ttacattcaatcacttctatattcttaaatcattaccggtgtttacg |
465 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||| |||| |
|
|
| T |
22556280 |
ttacattcaatcacttctattttcttaaattattacctgtgtctacg |
22556234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 465
Target Start/End: Complemental strand, 32199561 - 32199512
Alignment:
| Q |
416 |
tgattacattcaatcacttctatattcttaaatcattaccggtgtttacg |
465 |
Q |
| |
|
||||||||||| | ||||| ||| ||||||||| |||||||||||||||| |
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|
| T |
32199561 |
tgattacattcgaccacttttattttcttaaattattaccggtgtttacg |
32199512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 453
Target Start/End: Complemental strand, 10338654 - 10338617
Alignment:
| Q |
416 |
tgattacattcaatcacttctatattcttaaatcatta |
453 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
10338654 |
tgattacattcaatcacttctattttcttaaattatta |
10338617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 472
Target Start/End: Complemental strand, 3523433 - 3523380
Alignment:
| Q |
419 |
ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagt |
472 |
Q |
| |
|
|||||||||||||||||||| || | |||| |||| |||||| ||||||||||| |
|
|
| T |
3523433 |
ttacattcaatcacttctattttatcaaattattatcggtgtctacgtgtcagt |
3523380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 22402425 - 22402369
Alignment:
| Q |
419 |
ttacattcaatcacttctatattcttaaatcattaccggtgtttacgtgtcagtatc |
475 |
Q |
| |
|
|||||||||||||||||||| |||| || | ||||||||| | ||| |||||||||| |
|
|
| T |
22402425 |
ttacattcaatcacttctattttctcaatttattaccggtctctacatgtcagtatc |
22402369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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