View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_12 (Length: 506)
Name: NF3890_low_12
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 506
Target Start/End: Original strand, 36547513 - 36548012
Alignment:
| Q |
7 |
tccaagaatatgatctccaactgttctttacaacnnnnnnngtgaagggacttaaagatagtctgatgaaattggaaaccaaaacaatttatattctctc |
106 |
Q |
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| T |
36547513 |
tccaacaatatgatctccaacagttctctacaactttttttgtgaagggacttaaagatagtctgatgaaattggaaaccaaaacaatttatattctctc |
36547612 |
T |
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| Q |
107 |
aaactttcctgttagcaggtcctattacttggaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttc |
206 |
Q |
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| T |
36547613 |
aaactttcctgttagcaggtcctattacttggaagattacatcataagaatcttgtgggtttggtgggatatgcagcagaaagaggacgacacatgcttc |
36547712 |
T |
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| Q |
207 |
tttacatttatatgagcaacggtagtcttgcttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcgg |
306 |
Q |
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| T |
36547713 |
tttacatttatatgatcaacggtagtcttgcttctcatttgtatggtaagaaaaagagcaattcttgtcctttaatatttgtagggagtattttgtgcgg |
36547812 |
T |
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| Q |
307 |
atatttgctcggtggtatacatgttctcactattcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttaccttt |
406 |
Q |
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| T |
36547813 |
atatttgctcggtggtatacatgttctcactattcaattgctcaataatagctaaaaaatttagcttgaactcttctggttatttgttttacttaccttt |
36547912 |
T |
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| Q |
407 |
gtgttgatgatccaggcgaaaatcatgagacattgagctggaatatgagacttggcatagcactagacgttgcaagggtgatggaatatcttcattattc |
506 |
Q |
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| T |
36547913 |
gtgttgatgatccaggcgaaaatcatgagccattgagctggaatatgagacttggcatagcactagacgttgcaagggtgatggaatatctacattattc |
36548012 |
T |
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