View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_16 (Length: 389)
Name: NF3890_low_16
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 25 - 377
Target Start/End: Original strand, 26489329 - 26489681
Alignment:
| Q |
25 |
gattggtcaaggcattgaacgttttagattggaagacgtgatttattgtagtctatacttatacatggttgtgctttactannnnnnnnngcataatgta |
124 |
Q |
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| T |
26489329 |
gattgatcaaggcattgaacgttttagattggaagacgtgatttattgtagtctattcatatacatggttgtgctttgctaattttttttgcataatgta |
26489428 |
T |
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| Q |
125 |
tcctaattttgcaggaaaacttgcagcacataggttttaaatttaattagtttttcttcgtgtaagcattccttttaagagcttagacttgattgacaaa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26489429 |
tcctaattttgcaggaaaacttgcagcacataggttttaaatttaattagtttttcttcgtgtaagcattccttttaagagcttagacttgattgacaaa |
26489528 |
T |
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| Q |
225 |
cacttgccttgtacgcaattttcagtcatataatgagaatggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctcgacaaa |
324 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26489529 |
cacttgccttgtacagaattttcagtcatataatgagaatggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctccgcaaa |
26489628 |
T |
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| Q |
325 |
ttgttagactaatcaccaacccattctttcctcatttgattccacgttatctc |
377 |
Q |
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| T |
26489629 |
ttattagactaatcaccaacccattctttcctcatttgattccacgttatctc |
26489681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 377
Target Start/End: Original strand, 41259515 - 41259629
Alignment:
| Q |
263 |
atggatgaaatttggaaatatgcatgtaccatatagttgaaactttagatggcctcgacaaattgttagactaatcaccaacccattctttcctcatttg |
362 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||| ||| || ||| ||||| |||| |||||||||||||||||||||| |||| |
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| T |
41259515 |
atggatgaaaatcagaaatatgcatgtaccatatagttgaaactctagggggtctctgtgctttgtttgactgatcaccaacccattctttcctcttttg |
41259614 |
T |
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| Q |
363 |
attccacgttatctc |
377 |
Q |
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| T |
41259615 |
attccacgctatctc |
41259629 |
T |
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