View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3890_low_18 (Length: 358)

Name: NF3890_low_18
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3890_low_18
NF3890_low_18
[»] chr7 (23 HSPs)
chr7 (1-348)||(9895308-9895653)
chr7 (1-180)||(38652296-38652475)
chr7 (8-167)||(25255786-25255946)
chr7 (1-177)||(15125817-15125991)
chr7 (43-218)||(5643869-5644044)
chr7 (54-177)||(5644208-5644331)
chr7 (43-218)||(5649721-5649896)
chr7 (54-177)||(5650060-5650183)
chr7 (97-194)||(21570136-21570233)
chr7 (226-303)||(4937558-4937635)
chr7 (226-311)||(11276670-11276755)
chr7 (232-312)||(39931017-39931097)
chr7 (229-312)||(39658808-39658891)
chr7 (226-308)||(29968607-29968689)
chr7 (232-312)||(19544823-19544903)
chr7 (229-296)||(18671806-18671873)
chr7 (229-303)||(13553614-13553688)
chr7 (229-303)||(17856365-17856438)
chr7 (229-303)||(18768044-18768118)
chr7 (1-63)||(21569911-21569973)
chr7 (226-303)||(27218552-27218629)
chr7 (229-314)||(34104113-34104198)
chr7 (232-312)||(36364155-36364235)
[»] chr3 (24 HSPs)
chr3 (1-180)||(22735064-22735243)
chr3 (232-348)||(22734108-22734224)
chr3 (1-177)||(17263405-17263582)
chr3 (1-121)||(20452297-20452417)
chr3 (232-312)||(34830032-34830112)
chr3 (229-304)||(14863894-14863969)
chr3 (229-303)||(36709546-36709620)
chr3 (229-303)||(55367246-55367319)
chr3 (226-303)||(2364910-2364987)
chr3 (232-301)||(48930365-48930434)
chr3 (232-303)||(30166774-30166845)
chr3 (229-303)||(15481188-15481262)
chr3 (229-303)||(21739953-21740027)
chr3 (232-306)||(40513151-40513225)
chr3 (226-303)||(19919659-19919736)
chr3 (226-314)||(962582-962670)
chr3 (229-303)||(10868239-10868313)
chr3 (226-272)||(21080803-21080849)
chr3 (226-272)||(21085392-21085438)
chr3 (229-303)||(42674869-42674943)
chr3 (226-303)||(10323001-10323078)
chr3 (226-303)||(34332245-34332322)
chr3 (277-346)||(46908057-46908126)
chr3 (232-312)||(31675570-31675650)
[»] chr1 (18 HSPs)
chr1 (1-218)||(11915921-11916137)
chr1 (5-207)||(30699787-30699989)
chr1 (1-178)||(37960034-37960211)
chr1 (1-149)||(39476859-39477007)
chr1 (232-312)||(45795914-45795994)
chr1 (5-143)||(24107567-24107704)
chr1 (232-303)||(1248016-1248087)
chr1 (232-298)||(13867268-13867334)
chr1 (229-303)||(20796293-20796367)
chr1 (232-317)||(5809220-5809305)
chr1 (226-303)||(6051236-6051313)
chr1 (226-299)||(35541667-35541740)
chr1 (231-303)||(49264394-49264466)
chr1 (229-312)||(20987791-20987874)
chr1 (232-295)||(45270880-45270943)
chr1 (226-288)||(27393394-27393456)
chr1 (259-348)||(7396107-7396196)
chr1 (119-176)||(26510705-26510762)
[»] chr8 (11 HSPs)
chr8 (232-348)||(5585328-5585444)
chr8 (12-218)||(32027252-32027463)
chr8 (226-303)||(7925019-7925096)
chr8 (226-303)||(8300436-8300513)
chr8 (226-303)||(11393778-11393855)
chr8 (226-303)||(23942720-23942797)
chr8 (229-303)||(24794382-24794456)
chr8 (226-303)||(172469-172546)
chr8 (229-306)||(29721338-29721414)
chr8 (226-303)||(41664798-41664875)
chr8 (259-303)||(25193754-25193798)
[»] chr4 (10 HSPs)
chr4 (1-218)||(2187054-2187269)
chr4 (1-197)||(21618740-21618936)
chr4 (232-306)||(43516175-43516249)
chr4 (226-303)||(23642021-23642098)
chr4 (229-299)||(26694564-26694634)
chr4 (229-303)||(42952935-42953009)
chr4 (226-303)||(23647679-23647756)
chr4 (232-303)||(7662738-7662809)
chr4 (226-288)||(137041-137103)
chr4 (226-303)||(47419437-47419514)
[»] chr6 (14 HSPs)
chr6 (1-177)||(25329395-25329568)
chr6 (1-177)||(26198292-26198465)
chr6 (1-177)||(6058890-6059065)
chr6 (1-163)||(10587229-10587388)
chr6 (232-303)||(14843567-14843638)
chr6 (229-295)||(33805416-33805482)
chr6 (226-303)||(24766844-24766921)
chr6 (258-315)||(26514389-26514446)
chr6 (229-295)||(13086175-13086241)
chr6 (229-303)||(21549484-21549558)
chr6 (232-312)||(14686429-14686509)
chr6 (232-287)||(34434899-34434954)
chr6 (229-303)||(11469204-11469278)
chr6 (226-304)||(21595147-21595225)
[»] chr5 (14 HSPs)
chr5 (1-177)||(3613397-3613568)
chr5 (1-177)||(18892247-18892423)
chr5 (17-218)||(22626160-22626361)
chr5 (226-303)||(27116603-27116680)
chr5 (226-303)||(30509477-30509554)
chr5 (226-303)||(30549817-30549894)
chr5 (226-314)||(33170291-33170379)
chr5 (1-69)||(41404770-41404838)
chr5 (229-303)||(35122136-35122210)
chr5 (232-305)||(380540-380613)
chr5 (226-303)||(30731744-30731821)
chr5 (226-303)||(42514353-42514430)
chr5 (229-303)||(38358103-38358177)
chr5 (226-314)||(27165384-27165472)
[»] chr2 (13 HSPs)
chr2 (1-177)||(7708862-7709039)
chr2 (225-303)||(33583857-33583935)
chr2 (231-303)||(11233920-11233992)
chr2 (226-347)||(13550750-13550871)
chr2 (226-347)||(13551203-13551324)
chr2 (1-78)||(41578069-41578146)
chr2 (226-301)||(35488470-35488545)
chr2 (232-303)||(45422159-45422230)
chr2 (226-303)||(8065691-8065768)
chr2 (226-263)||(15522167-15522204)
chr2 (1-117)||(26317494-26317611)
chr2 (232-312)||(11196990-11197070)
chr2 (229-301)||(36804755-36804827)
[»] scaffold0308 (1 HSPs)
scaffold0308 (232-303)||(17784-17855)
[»] scaffold0034 (1 HSPs)
scaffold0034 (226-303)||(105273-105350)
[»] scaffold1350 (1 HSPs)
scaffold1350 (226-301)||(177-252)
[»] scaffold0418 (1 HSPs)
scaffold0418 (232-303)||(8243-8314)
[»] scaffold0472 (1 HSPs)
scaffold0472 (226-311)||(3885-3970)
[»] scaffold0112 (1 HSPs)
scaffold0112 (234-303)||(15091-15160)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 9895308 - 9895653
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||| || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  9895308 ccaccacatacgaataccaaaaacaaaatggactttcttggcttgaagccactataaagaataagacttaacatttttcaataattgaaacataacattt 9895407  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||     
T  9895408 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagtcacaatttcagacta- 9895506  T
Q  201 ctatgtaaaaaataaacttaacttccaacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactc 300  Q
     | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  9895507 -tgtgtaaaaaataaacttaacttcaaacctccaacaccatttacctagcaaatcaatattaaattcccttaacttcctcaccgccaaccctccatactc 9895605  T
Q  301 cttacgcaaacatacaatattccaacgtaaccaagatattttcctatg 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9895606 cttacgcaaacatacaatattccaacgtaaccaagatattttcctatg 9895653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 38652475 - 38652296
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||| |||| ||||||||||  ||||||| ||| |||||||||| |||||||| ||||| |||||||||||||||| ||||    
T  38652475 ccaccacatatgagtcccaaaaataaaatagactttcttaacttgaagtcaccataaagaatacgacttaactttttctaataattgaaacatagtattt 38652376  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaaga 180  Q
    ||||||||||||||||   |||||||||| | |||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  38652375 tctttctgcttaaataccatgttgttacgctaattccacacaatccaagcacatagtaaccaaatcaactgaagaaaaga 38652296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 25255946 - 25255786
Alignment:
Q  8 atatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttcc-aataattgaaacatagcattttctttc 106  Q
    |||| ||| ||||||||||||||||||||||| |||||||| ||| |||||||||| || ||||| |||| | || |||| |||||||| ||||||||||    
T  25255946 atataagtcccaaaaacaaaacagactttcttagcttgaagtcaccataaagaatacgagttaacttttttctaagaattaaaacatagtattttctttc 25255847  T
Q  107 tgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatca 167  Q
     |||||||||||||| ||||||  |||||| |||||||||||||||||| |||||||||||    
T  25255846 cgcttaaataaactgctgttacactcattccacacaatccaagcacacaataaccaaatca 25255786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 15125991 - 15125817
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| |||||| | ||||| ||||||||  ||| ||||||| ||||||||||  ||||||| ||||| |||||||||||||||| ||||    
T  15125991 ccaccacatatgagtcccaaaagctaaacatactttcttaactttaagccaccataaagaatacaacttaactttttctaataattgaaacatagtattt 15125892  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
      ||||||||||||||| ||| |||||||  ||||| | ||||||||| |||||| ||||||||||| || ||||||    
T  15125891 --tttctgcttaaataacctgctgttacgcacattccaaacaatccaaacacacaataaccaaatcaactaaagaaa 15125817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 5643869 - 5644044
Alignment:
Q  43 ttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctttctgcttaaataaactgttgttacgttcattctacaca 142  Q
    ||||| |||| |||||||||  |||||||| ||||| | |||||||||||||  |||||||||||||||||||||  |||||||||  |||||| |||||    
T  5643869 ttgaaaccaccataaagaatgcgacttaactttttctagtaattgaaacataatattttctttctgcttaaataacatgttgttacactcattccacaca 5643968  T
Q  143 atccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactatctatgtaaaaaataaact 218  Q
    || |||   |||| ||||||||||| || |||||| ||| |  || ||||||||| | || ||||| |||| ||||    
T  5643969 attcaaatgcacaataaccaaatcaacttaagaaaggaccgccgcgatttcagaccacctgtgtaataaatgaact 5644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 5644208 - 5644331
Alignment:
Q  54 ataaagaataagacttaacattttccaataattgaaacatagcattttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcaca 153  Q
    |||||||||  |||||||| ||||| | |||||||||||||  ||||| |||||||||||||||  |||||||||  |||||| |||||||||||   ||    
T  5644208 ataaagaatgcgacttaactttttctagtaattgaaacataatattttatttctgcttaaataacatgttgttacactcattccacacaatccaaatgca 5644307  T
Q  154 cagtaaccaaatcagctgaagaaa 177  Q
    || ||||||||||| |||||||||    
T  5644308 caataaccaaatcaactgaagaaa 5644331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 5649721 - 5649896
Alignment:
Q  43 ttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctttctgcttaaataaactgttgttacgttcattctacaca 142  Q
    ||||| |||| |||||||||  |||||||| ||||| | |||||||||||||  |||||||||||||||||||||  |||||||||  |||||| |||||    
T  5649721 ttgaaaccaccataaagaatgcgacttaactttttctagtaattgaaacataatattttctttctgcttaaataacatgttgttacactcattccacaca 5649820  T
Q  143 atccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactatctatgtaaaaaataaact 218  Q
    || |||   |||| ||||||||||| || |||||| ||| |  || ||||||||| | || ||||| |||| ||||    
T  5649821 attcaaatgcacaataaccaaatcaacttaagaaaggaccgccgcgatttcagaccacctgtgtaataaatgaact 5649896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 5650060 - 5650183
Alignment:
Q  54 ataaagaataagacttaacattttccaataattgaaacatagcattttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcaca 153  Q
    |||||||||  |||||||| ||||| | |||||||||||||  ||||| |||||||||||||||  |||||||||  |||||| |||||||||||   ||    
T  5650060 ataaagaatgcgacttaactttttctagtaattgaaacataatattttatttctgcttaaataacatgttgttacactcattccacacaatccaaatgca 5650159  T
Q  154 cagtaaccaaatcagctgaagaaa 177  Q
    || ||||||||||| |||||||||    
T  5650160 caataaccaaatcaactgaagaaa 5650183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 21570136 - 21570233
Alignment:
Q  97 attttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttca 194  Q
    ||||||||||||| |||||||  |||||||||  |||| | ||||||| ||| ||||||||||||||||||| |||||||||||| || || ||||||    
T  21570136 attttctttctgcgtaaataatttgttgttactctcatcccacacaattcaaacacacagtaaccaaatcagttgaagaaaagactgtcgcgatttca 21570233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 4937635 - 4937558
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  4937635 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 4937558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 311
Target Start/End: Complemental strand, 11276755 - 11276670
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaac 311  Q
    ||||| ||||||||||||||| | |||  |||| ||||| ||||| ||| || | ||||||||||||||||||||||| |||||||    
T  11276755 caaccgccaacaccatttacccaccaaagcaatgttaaactccctcaacctcgtaacccccaaccctccatactccttccgcaaac 11276670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 39931097 - 39931017
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||||| ||   |||||||||  ||||| ||| |||| ||||||||||||||||||||||| | ||||||    
T  39931097 ccaacaccatttacctaacagagcaatattaagctccctcaacctcctaacccccaaccctccatactcctttctcaaaca 39931017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 39658891 - 39658808
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||| ||||  ||  ||  ||||||||||||||||| |||||||||||| |||||| ||||||| || |||||    
T  39658891 cctccaacaccatttccctaataaagcacaattaaattcccttaactgcctcacccccaatcctccaaactcctttcgtaaaca 39658808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 29968607 - 29968689
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgca 308  Q
    ||||| ||||||||||||||| | |||  |||||||||| ||||| ||  || | ||||||||||||||||||||||| ||||    
T  29968607 caaccgccaacaccatttacccaacaaagcaatattaaactccctcaatctcgtaacccccaaccctccatactccttccgca 29968689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 19544903 - 19544823
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    |||||||||||| ||||  ||  || ||||||| ||||| |||| ||| ||||| |||||||||||||||||||| |||||    
T  19544903 ccaacaccatttgcctaataaggcactattaaactccctcaactgcctgacccctaaccctccatactccttacgtaaaca 19544823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 18671806 - 18671873
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccat 296  Q
    ||||||||||||||||||||| ||  ||| |||||||||| | |||||||| ||| |||| |||||||    
T  18671806 cctccaacaccatttacctagtaaagcaacattaaattccttcaacttcctaaccaccaaacctccat 18671873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 13553688 - 13553614
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||| ||| |||  ||| |||||| ||||| ||| |||| ||||||||||| ||| |||||||    
T  13553688 cctccaacaccatttatctaacaaagcaaaattaaactccctcaacctcctaacccccaaccccccagactcctt 13553614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 17856365 - 17856438
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||| ||||||||| | | |||||| ||| | |||||||| | ||||||||||||| |||||||    
T  17856365 cctccaacaccatttccctagcaatgctacattaaactccttcaacttcctga-ccccaaccctccaaactcctt 17856438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 18768044 - 18768118
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | ||  |||| |||||||| |||||| |||||||    
T  18768044 cctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctaacccccaaacctccaaactcctt 18768118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 21569911 - 21569973
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaata 63  Q
    |||||||||||||||||||| | |||| |   |||||||||||| ||||||| ||||||||||    
T  21569911 ccaccacatatgagtaccaacatcaaagctagctttcttggctttaagccaccataaagaata 21569973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 27218629 - 27218552
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||| ||||||||||||||||| |||  | | |||||||| ||  |||| ||||||||||| ||||||| |||||||    
T  27218629 caaccgccaacaccatttacctaacaaagctaaattaaatttccgcaactgcctcacccccagccctccaaactcctt 27218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 34104113 - 34104198
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacata 314  Q
    |||||| ||||||||  |||| ||  || ||||||| ||||| || | ||| ||||| |||||||||||||||||||| |||||||    
T  34104113 cctccagcaccatttgtctagtaagacactattaaactccctcaaatgcctgacccctaaccctccatactccttacgtaaacata 34104198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 36364155 - 36364235
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||  | |||  |||||||||| ||||| ||  |||| ||||||||||| ||||||||||| | ||||||    
T  36364155 ccaacaccatttactcaacaaagcaatattaaactccctcaatctcctaacccccaacccaccatactcctttctcaaaca 36364235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 22735243 - 22735064
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||||||||  |||||||||||| |||||||||  |||||| |||| ||||||||||||| ||||| ||||| |||||||||||||||  ||||    
T  22735243 ccaccacatatgagtctcaaaaacaaaacggactttcttaacttgaatccaccataaagaataagatttaaccttttctaataattgaaacataatattt 22735144  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaaga 180  Q
    |||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||    
T  22735143 tctttctgcttaaataacatgttgttacgctcattccacacaatccaagcacacagtaaccaaataaactgaagaaaaga 22735064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 348
Target Start/End: Complemental strand, 22734224 - 22734108
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaatattccaacgtaac 331  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  22734224 ccaacaccatttacctagtaaagcaatattaaattcccttaacttcctcacctccaatcctccatactccttacgcaaacaaacaatattccaacgtaac 22734125  T
Q  332 caagatattttcctatg 348  Q
    |||||||||||||||||    
T  22734124 caagatattttcctatg 22734108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 17263582 - 17263405
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttcc-aataattgaaacatagcatt 99  Q
    ||||||||||||||| |||||| |||||| ||||| ||| |||| ||||||| ||||||||||  ||||||| |||| | |||||||||||||||| |||    
T  17263582 ccaccacatatgagttccaaaagcaaaacggacttccttagctttaagccaccataaagaatacaacttaacttttttctaataattgaaacatagtatt 17263483  T
Q  100 ttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    || |||||| |||||||| ||  ||||||| |||||| | |||||||||||||||||||||||||| | |||||||||    
T  17263482 ttatttctgtttaaataacctcctgttacgctcattccaaacaatccaagcacacagtaaccaaattaactgaagaaa 17263405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 20452297 - 20452417
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||  ||||  ||  |||||||| ||||| |||||||| ||||||| ||||    
T  20452297 ccaccacatatgagtcccaaaaacaaaacggactttcttagcttgaagccaccgtaaaatatgcgacttaactttttctaataattgtaacatagtattt 20452396  T
Q  101 tctttctgcttaaataaactg 121  Q
    ||||| |||||||||||||||    
T  20452397 tctttttgcttaaataaactg 20452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 34830032 - 34830112
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||||| |||  || ||||||||||    ||||||||||||||||||||||||||||||||||| |||||    
T  34830032 ccaacaccatttacctaacaaagcactattaaattcatgcaacttcctcacccccaaccctccatactccttacgtaaaca 34830112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 14863969 - 14863894
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctta 304  Q
    |||||||||||||||||||| |||| ||| |||||| ||||| ||  |||| ||||||||||||||| ||||||||    
T  14863969 cctccaacaccatttacctaacaatgcaaaattaaactccctcaatctcctaacccccaaccctccagactcctta 14863894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 36709546 - 36709620
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | |||||||| |||||||| ||||||| ||||||    
T  36709546 cctccaacaccatttacctagtaaagcaatattaaactccttcaacttcctaacccccaaacctccatgctcctt 36709620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 55367246 - 55367319
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||| |||| |||  ||| |||||||||| | |||||||||||||||||||| |||||||||||    
T  55367246 cctccaacaccattttcctaacaacgcaagattaaattccttcaacttcctcacccccaaccc-ccatactcctt 55367319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 2364910 - 2364987
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  2364910 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 2364987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 48930365 - 48930434
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcc 301  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||| ||| ||||||||| |||||| |||||    
T  48930365 ccaacaccatttacctaacaatgcaatattaaactccctcaacctccgcacccccaaacctccaaactcc 48930434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 30166845 - 30166774
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| |||  || ||||||||||| | |||| |||||||||||| ||||||| ||||||    
T  30166845 ccaacaccatttacctaacaaagcactattaaattccttcaactgcctcacccccaaacctccattctcctt 30166774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 15481262 - 15481188
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||  ||  |||||||||| ||| | |||||||| |||||||| ||||||| ||||||    
T  15481262 cctccaacaccatttacctaataaagcaatattaaactccttcaacttcctaacccccaaacctccatgctcctt 15481188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 21740027 - 21739953
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||| |||  ||| |||||| ||||| ||  |||| ||||||||||||||| |||||||    
T  21740027 cctccaacaccatttacctaacaaagcaaaattaaactccctcaatctccttacccccaaccctccagactcctt 21739953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 40513225 - 40513151
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacg 306  Q
    ||||||||||||||||| |||  || ||||||| |||   ||||||||||||||||| || ||||||||||||||    
T  40513225 ccaacaccatttacctaacaaagcactattaaaatcctgcaacttcctcacccccaaacccccatactccttacg 40513151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 19919736 - 19919659
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||| || | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  19919736 caacctccaacaccatttgcccaacaaggcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 19919659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 962670 - 962582
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacata 314  Q
    |||||||||||||||||| |||| |||  |||||||||| ||||| ||  |||| || |||| |||||| |||||||| | ||||||||    
T  962670 caacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccctccgtactccttcctcaaacata 962582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 10868239 - 10868313
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||| |||  ||| |||||| ||||| ||  |||| ||||| ||||||||| |||||||    
T  10868239 cctccaacaccatttacctaacaaagcaaaattaaactccctcaatctccttacccctaaccctccagactcctt 10868313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 21080849 - 21080803
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattccctta 272  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||||||||    
T  21080849 caacctccaccaccatttacctaacaattccatattgaattccctta 21080803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 21085438 - 21085392
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattccctta 272  Q
    ||||||||| ||||||||||||| |||||| ||||| ||||||||||    
T  21085438 caacctccaccaccatttacctaacaattccatattgaattccctta 21085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 42674943 - 42674869
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | ||  |||||||| |||| ||||||| ||||||    
T  42674943 cctccaacaccatttacctagtaaaacaatattaaactccttcaatctcctcacctccaaacctccatgctcctt 42674869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 10323078 - 10323001
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| | | || | ||||||||||||||| |||||||    
T  10323078 caacctccaacaccatttacccaacaaagcaatgttaaactccctcagcctcttaacccccaaccctccaaactcctt 10323001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 34332322 - 34332245
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||| ||||||||||||||| | |||  |||| ||||| || || ||| || | |||||||||||||||||||||||    
T  34332322 caaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaacccccaaccctccatactcctt 34332245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 46908126 - 46908057
Alignment:
Q  277 cctcacccccaaccctccatactccttacgcaaacatacaatattccaacgtaaccaagatattttccta 346  Q
    ||||||||||||||||||| |||||||  | ||||| ||| ||| ||||| || ||| ||||||||||||    
T  46908126 cctcacccccaaccctccaaactccttctgtaaacacacattatgccaacctatccatgatattttccta 46908057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 31675570 - 31675650
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||||| |||  ||   ||||| ||||| ||||  |||||||| ||||||||||||||||| || |||||    
T  31675570 ccaacaccatttacctaacaaagcatggttaaactccctcaactgtctcacccctaaccctccatactcctttcgtaaaca 31675650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11915921 - 11916137
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||| ||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||  |||||||| ||||||| ||||    
T  11915921 ccaccacatatgagtcccaaaaataaaacggactttcttagcttgaatccaccataaagaataagacttaacattttttaataattg-aacatagtattt 11916019  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactat 200  Q
    ||||||||||| ||||| ||||||||||| || ||  |||||||||||||||||||||||||||||| | ||||||||||| |   | ||||||||| |     
T  11916020 tctttctgcttcaataacctgttgttacgctcgttacacacaatccaagcacacagtaaccaaatcaaccgaagaaaagaccgccacgatttcagaccac 11916119  T
Q  201 ctatgtaaaaaataaact 218  Q
    || ||||| |||||||||    
T  11916120 ctgtgtaataaataaact 11916137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 30699989 - 30699787
Alignment:
Q  5 cacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctt 104  Q
    ||||||||||| ||||||| ||||  ||||||||| | |||||||||| ||||||||||||||||||  ||||  |||||||||||||||| ||||||||    
T  30699989 cacatatgagtcccaaaaataaaatggactttcttagtttgaagccacaataaagaataagacttaaacttttttaataattgaaacatagtattttctt 30699890  T
Q  105 tctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactatctat 204  Q
    |||||||||||||  |||||||| | | ||||||| |||||||| |||||||||||||||||| ||||||||||||| |  || |||||| |||||||||    
T  30699889 tctgcttaaataacttgttgttatgcttattctacgcaatccaaacacacagtaaccaaatcaactgaagaaaagaccgccgcgatttcaaactatctat 30699790  T
Q  205 gta 207  Q
    |||    
T  30699789 gta 30699787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 37960211 - 37960034
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| |||||||||  |||||||| ||||| ||||||| |||||||| ||||    
T  37960211 ccaccacatatgagtcccaaaaacaaaacggactttcttagcttgaagacaccataaagaatgcgacttaactttttctaataattaaaacatagtattt 37960112  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaa 178  Q
    | ||||||||||||||| |||  |||||| |||||| |||||||||||||  ||||||||||||||| ||||| ||||    
T  37960111 tttttctgcttaaataacctgcagttacgctcattccacacaatccaagcgtacagtaaccaaatcaactgaaaaaaa 37960034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39476859 - 39477007
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||||||||  ||||||||| |||||||| |   ||| |||||  |||||||| ||||| ||||||| |||||||| |||     
T  39476859 ccaccacatatgagtcccaaaaacaaaaaggactttcttagcttgaaggcttcatagagaatgtgacttaactttttctaataattcaaacatagtattg 39476958  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaag 149  Q
    |||||||||||||||||  || | ||||| |||||| ||||||||||||    
T  39476959 tctttctgcttaaataacatgatattacgctcattccacacaatccaag 39477007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 45795914 - 45795994
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||||| |||  || |||||||||||   ||||||||||||||||||||||||||||||||||| |||||    
T  45795914 ccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatactccttacgtaaaca 45795994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 24107567 - 24107704
Alignment:
Q  5 cacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctt 104  Q
    ||||| ||||||||||||| ||||    ||||||| ||||  | |||| ||||||||| | |||| || ||| ||||||| ||||| || | ||||||||    
T  24107567 cacatttgagtaccaaaaataaaattagctttcttagctttcaaccaccataaagaatta-acttgacttttcccaataaatgaaatatggtattttctt 24107665  T
Q  105 tctgcttaaataaactgttgttacgttcattctacacaa 143  Q
    |||||||||||||  ||||||||| || |||||||||||    
T  24107666 tctgcttaaataacatgttgttaccttaattctacacaa 24107704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 1248087 - 1248016
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||| ||||||||| |||  || ||||||| |||||||||| ||||||||| ||||| |||||||||||    
T  1248087 ccaacactatttacctaacaaagcactattaaactcccttaactgcctcacccctaaccccccatactcctt 1248016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 13867334 - 13867268
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatac 298  Q
    ||||||||||||||||| |||  || |||||||||||   ||||||||||||||||| |||||||||    
T  13867334 ccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaacctccatac 13867268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 20796293 - 20796367
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||| |||  ||| |||||| ||||| ||| |||| |||||||| |||||| |||||||    
T  20796293 cctccaacaccatttacctaacaaagcaaaattaaactccctcaacctcctaacccccaatcctccagactcctt 20796367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 5809220 - 5809305
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaa 317  Q
    |||||||||| |||||| |||  |  |||||||||||   ||||||||||||||||||| || |||||||||||| ||||| ||||    
T  5809220 ccaacaccatgtacctaacaaagcgctattaaattcctgcaacttcctcacccccaaccgtctatactccttacgtaaacaaacaa 5809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 6051236 - 6051313
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||| | ||| || | |||||||||||||||||||||||    
T  6051236 caacctccaacaccatttacccaacaaagcaatgttaaactccttcaacctcttaacccccaaccctccatactcctt 6051313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 35541667 - 35541740
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatact 299  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||    
T  35541667 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatact 35541740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 49264466 - 49264394
Alignment:
Q  231 tccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||| |||  |||  ||||| ||||| ||| |||| ||||||||||||||| |||||||    
T  49264466 tccaacaccatttacctaacaaaacaaagttaaactccctcaacctcctaacccccaaccctccagactcctt 49264394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 312
Target Start/End: Original strand, 20987791 - 20987874
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    |||||| |||||||| |||| |||  || ||||||||||||| |||| ||| ||||||| ||| ||| |||||||||| |||||    
T  20987791 cctccagcaccatttccctaacaacgcagtattaaattccctcaactgcctaacccccagcccaccaaactccttacgtaaaca 20987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 45270880 - 45270943
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctcca 295  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||| ||  ||||||||| ||||||    
T  45270880 ccaacaccatttacctaacaatgcaatattaaactccctcaacctctgcacccccaaacctcca 45270943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 27393456 - 27393394
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaa 288  Q
    ||||||||||||||| || |||| |||| ||| |||||| ||||  |||||||||||||||||    
T  27393456 caacctccaacaccactttcctaacaatgcaagattaaactcccgcaacttcctcacccccaa 27393394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 7396196 - 7396107
Alignment:
Q  259 attaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaatattccaacgtaaccaagatattttcctatg 348  Q
    |||||| ||||| ||||  || |||| ||||||||||||||||||| ||| ||| ||| ||| ||||| || |||| | |||||||||||    
T  7396196 attaaactccctcaactgtctaaccctcaaccctccatactccttatgcagacacacattatgccaacctatccaaaagattttcctatg 7396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 26510762 - 26510705
Alignment:
Q  119 ctgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaa 176  Q
    |||||||||||||||||| |||||| ||| ||||| |||||||| || || |||||||    
T  26510762 ctgttgttacgttcattccacacaaaccaggcacaaagtaaccatataagttgaagaa 26510705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 5585328 - 5585444
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaatattccaacgtaac 331  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||    
T  5585328 ccaacaccatttacctagtaaagcaatattaaattcccttaacttcctcacctccaatcctccatactccttacgcaaacaaacaatattccaacgtaac 5585427  T
Q  332 caagatattttcctatg 348  Q
    |||||||||||||||||    
T  5585428 caagatattttcctatg 5585444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 32027252 - 32027463
Alignment:
Q  12 gagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctttctgctt 111  Q
    |||| ||||| ||||||| ||||||||| ||||||||| || |||||||||||||||| || ||||| ||||| ||||  |||| |||||||||||||||    
T  32027252 gagtcccaaatacaaaacggactttcttagcttgaagctaccataaagaataagacttgaccttttctaataactgaagaatagtattttctttctgctt 32027351  T
Q  112 aaata----aac-tgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactatctatgt 206  Q
    |||||    ||| |||||||||  |||||| ||||||| |||||||||| |||||||||||  |||||||||||| |  |||||||||||| | || |||    
T  32027352 aaatataataacttgttgttacactcattccacacaattcaagcacacaataaccaaatcaattgaagaaaagaccgccgcaatttcagaccacctgtgt 32027451  T
Q  207 aaaaaataaact 218  Q
    || |||||||||    
T  32027452 aataaataaact 32027463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 7925019 - 7925096
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  7925019 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 7925096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 8300436 - 8300513
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  8300436 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 8300513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 11393855 - 11393778
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||||| |||| ||| |||||| ||||| ||   ||| ||||||||||||||| |||||||    
T  11393855 caacctccaacaccatttacctaacaatgcaaaattaaactccctcaatcacctaacccccaaccctccagactcctt 11393778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 23942720 - 23942797
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||||||| ||  ||| |||||| ||| | |||||||| |||||||| ||||||| ||||||    
T  23942720 caacctccaacaccatttacctagtaaagcaacattaaactccttcaacttcctgacccccaaacctccatgctcctt 23942797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 24794382 - 24794456
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||| |||  ||| |||||| ||||| ||  |||| ||||||||||||||| |||||||    
T  24794382 cctccaacaccatttacctaacaaagcaaaattaaactccctcaatctcctaacccccaaccctccagactcctt 24794456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 172546 - 172469
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||| ||||||||||| | |||  |||| ||||| ||||| ||| || | | |||||||||||||||||||||    
T  172546 caacctccagcaccatttacccaacaaagcaatgttaaactccctcaacctcttaaaccccaaccctccatactcctt 172469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 29721414 - 29721338
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacg 306  Q
    ||||||||||||||| |||| |||  ||| |||||| ||| | || |||||||| |||||||| ||||||||||||||    
T  29721414 cctccaacaccatttgcctaacaacgcaagattaaactccttcaatttcctcacacccaaccc-ccatactccttacg 29721338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 41664875 - 41664798
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||| ||||||||||||||| | |||  |||| ||||| || || ||| || | |||||||||||||||||||||||    
T  41664875 caaccgccaacaccatttacccaacaaagcaatgttaaactctctcaacctcgtaacccccaaccctccatactcctt 41664798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 25193754 - 25193798
Alignment:
Q  259 attaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| |||||| ||||| |||||| |||||||    
T  25193754 attaaattcccttaactgcctcacacccaatcctccaaactcctt 25193798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 2187054 - 2187269
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| ||||||||||||   | ||||||  ||||||||||| ||||| |||  |||||||| ||||| |||||||||||||||| ||||    
T  2187054 ccaccacatatgagtcccaaaaacaaaaggaattttcttaacttgaagccaccataaaaaat--gacttaactttttctaataattgaaacatagtattt 2187151  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactat 200  Q
    ||||| |||||||||||  |||||||||| |||||| |||||||  ||||||||||||||||||||| ||||||||| ||| |  |||||||||||| |     
T  2187152 tctttttgcttaaataatttgttgttacgctcattccacacaatttaagcacacagtaaccaaatcaactgaagaaaggaccgccgcaatttcagaccac 2187251  T
Q  201 ctatgtaaaaaataaact 218  Q
    || ||||| |||| ||||    
T  2187252 ctgtgtaataaatgaact 2187269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 21618936 - 21618740
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagact-taacattttccaataattgaaacatagcatt 99  Q
    ||||||||| | |||  |||||||||||| |||||| ||  ||||||||||| |||||||||| |||| |||| ||||| |||||||||||||| | |||    
T  21618936 ccaccacatgtaagtctcaaaaacaaaacggacttttttaacttgaagccaccataaagaatacgactataactttttctaataattgaaacatggtatt 21618837  T
Q  100 ttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagac 197  Q
    || ||||||||||||||| ||| ||||||| |||||| ||||||||||||||||||| || ||||||| || || ||| ||| |  ||||||||||||    
T  21618836 tt-tttctgcttaaataacctgctgttacgctcattccacacaatccaagcacacagcaatcaaatcaactaaaaaaaggaccgccgcaatttcagac 21618740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 43516249 - 43516175
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacg 306  Q
    ||||||||||||||||| |||  || |||||||||||   |||||||||||||||||||||||||||||||||||    
T  43516249 ccaacaccatttacctaacaaagcactattaaattcctgcaacttcctcacccccaaccctccatactccttacg 43516175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 23642098 - 23642021
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  23642098 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 23642021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 26694564 - 26694634
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatact 299  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | ||  ||||||||||||| ||||||||||    
T  26694564 cctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctcacccccaaacctccatact 26694634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 42953009 - 42952935
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||||| |||  ||| |||||| ||||| ||  |||| ||||||||||||||| |||||||    
T  42953009 cctccaacaccatttacctaacaaagcaaaattaaactccctcaatctcctaacccccaaccctccagactcctt 42952935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 23647756 - 23647679
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||| | | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  23647756 caacctccaacaccatttatccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 23647679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 7662809 - 7662738
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| |||  || ||||||||||| | ||||  ||||||||||| ||||||| ||||||    
T  7662809 ccaacaccatttacctaacaaagcactattaaattccttcaactgtctcacccccaaacctccattctcctt 7662738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 137041 - 137103
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaa 288  Q
    ||||||||| |||||||| ||||| ||   ||||||||||||||||||| |||| ||||||||    
T  137041 caacctccagcaccattttcctagtaaagaaatattaaattcccttaacctcctaacccccaa 137103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 47419437 - 47419514
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||||| |||  |||| ||||| ||||| | | ||   ||||||||||||||| |||||||    
T  47419437 caacctccaacaccatttacctaacaaagcaatgttaaactccctcagcctctgaacccccaaccctccaaactcctt 47419514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 25329395 - 25329568
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||||||||   ||||||||||| || |||||| | || ||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  25329395 ccaccacatatgagtctaaaaaacaaaacggaatttcttagttttaagccaccataaagaataagacttaactttttctaataattgaaacatagtattt 25329494  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    |||||||||||||||||    |||||||| |||||| ||||| | |||||||||| ||||||||||| |||||||||    
T  25329495 tctttctgcttaaataa---cttgttacgctcattcaacacatttcaagcacacattaaccaaatcaactgaagaaa 25329568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 26198465 - 26198292
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||||||||   ||||||||||| || |||||| | || ||||||| ||||||||||||||||||| ||||| |||||||||||||||| ||||    
T  26198465 ccaccacatatgagtctaaaaaacaaaacggaatttcttagttttaagccaccataaagaataagacttaactttttctaataattgaaacatagtattt 26198366  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    |||||||||||||||||    |||||||| |||||| ||||| | |||||||||| ||||||||||| |||||||||    
T  26198365 tctttctgcttaaataa---cttgttacgctcattcaacacatttcaagcacacattaaccaaatcaactgaagaaa 26198292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 6059065 - 6058890
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||| |||| |||| |||||||   ||||||||  ||||||||||| |||||||||| |||||||  ||||| |||||||||||||||| ||||    
T  6059065 ccaccacatacgagtcccaataacaaaatgcactttcttatcttgaagccaccataaagaatacgacttaat-ttttctaataattgaaacatagtattt 6058967  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    |||||||||||||||||  ||||||| || |||||| |||||||||||||||| ||||||||||||| || ||||||    
T  6058966 tctttctgcttaaataacatgttgttgcgctcattccacacaatccaagcacatagtaaccaaatcaacttaagaaa 6058890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10587388 - 10587229
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||| | || | || |||||||| ||||||||  |||||||||||| |||||||||| |||||||| ||||| |||||||||||||||  ||||    
T  10587388 ccaccacatacgtgtcctaataacaaaacggactttctaagcttgaagccaccataaagaatacgacttaactttttctaataattgaaacatattattt 10587289  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaa 163  Q
    |||||||| |||||||  |   |||||||||||||| ||||||||||||||||||||||||||    
T  10587288 tctttctggttaaatagcc---tgttacgttcattccacacaatccaagcacacagtaaccaa 10587229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 14843638 - 14843567
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| ||| ||| ||||||| ||||| | ||| ||||| ||||||||||||||||||||    
T  14843638 ccaacaccatttacctaacaaatcactattaaactccctcagctttctcactcccaaccctccatactcctt 14843567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 33805416 - 33805482
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctcca 295  Q
    ||||||||||||||| ||||||||| ||| |||||| ||| | |||||||| |||||||||||||||    
T  33805416 cctccaacaccatttccctagcaatgcaacattaaactccttcaacttcctgacccccaaccctcca 33805482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 24766921 - 24766844
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||| ||||||||||||||||| |||  ||| |||||| || |||||| || | |||||||||||||||||||||||    
T  24766921 caaccgccaacaccatttacctaacaaagcaacattaaactctcttaacctcgtaacccccaaccctccatactcctt 24766844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 26514389 - 26514446
Alignment:
Q  258 tattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatac 315  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||| || ||||||||    
T  26514389 tattaaattcccttatctgtctcacccccaaccctccatactcctttcgtaaacatac 26514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 13086175 - 13086241
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctcca 295  Q
    |||||||||||||||||||| |||  ||| |||||| ||| | |||||||| |||||||||||||||    
T  13086175 cctccaacaccatttacctaacaaagcaacattaaactccttcaacttcctaacccccaaccctcca 13086241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 21549484 - 21549558
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | ||  ||||||||||||| ||||||| ||||||    
T  21549484 cctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctcacccccaaacctccatgctcctt 21549558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 14686509 - 14686429
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    ||||||||||||||||| |||  |  |||||||||||| |||| ||||||| ||||| || ||||| |||||||| |||||    
T  14686509 ccaacaccatttacctaacaaagcgctattaaattcccgtaacctcctcactcccaaaccaccatattccttacgtaaaca 14686429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 287
Target Start/End: Original strand, 34434899 - 34434954
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcaccccca 287  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||| ||| ||||||||    
T  34434899 ccaacaccatttacctaacaatgcaatattaaactccctcaacctccgcaccccca 34434954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 11469204 - 11469278
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||||||| | |||||||| ||  | |||||||| ||| |||  |||||| |||||||    
T  11469204 cctccaacaccatttacctagcaatgctatattaaactctttcaacttcctaaccgccagacctccaaactcctt 11469278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 304
Target Start/End: Original strand, 21595147 - 21595225
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctta 304  Q
    ||||||||| ||||| || |||| |||  | ||||||||||| ||||||| ||| |||||||||||||| | |||||||    
T  21595147 caacctccaccaccaatttcctaacaaagccatattaaattcacttaactgcctaacccccaaccctcctttctcctta 21595225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 3613568 - 3613397
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    ||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||  |||| ||| ||||  |||||||||||||||| ||||    
T  3613568 ccaccacatatgagttccaaaaacaaaacaaactttcttagcttgaagccaccataaagaatgcgactaaactttttataataattgaaacatagtattt 3613469  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
     |||||||||||||||| || |||||||| |||||| |||||||||||     || ||||||||||| |||||||||    
T  3613468 cctttctgcttaaataacctattgttacgctcattccacacaatccaa-----caataaccaaatcaactgaagaaa 3613397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 18892423 - 18892247
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||||||||||  ||||  ||||||||||||||||  ||| ||||||| |||||||||| | |||||| ||||| ||||| ||||| |||| ||||    
T  18892423 ccaccacatatgagtctcaaaggcaaaacagactttcttaactttaagccaccataaagaatacggcttaactttttctaataagtgaaaaatagtattt 18892324  T
Q  101 tctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    |||||||||||||||||| |||||||||| |||||  ||||||||| || | ||||||||||||||| |||||||||    
T  18892323 tctttctgcttaaataaattgttgttacgctcatttcacacaatccgagtatacagtaaccaaatcaactgaagaaa 18892247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 22626361 - 22626160
Alignment:
Q  17 ccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattttctttctgcttaaata 116  Q
    |||||||||||||  ||||||||  ||| || ||||   |||||||| |||||||| ||||| |||||||||||||||  ||||||||||||||||||||    
T  22626361 ccaaaaacaaaacgaactttcttaactttaaaccacataaaagaatacgacttaactttttctaataattgaaacatattattttctttctgcttaaata 22626262  T
Q  117 aactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaaagacagttgcaatttcagactatctatgtaaaaaataaa 216  Q
    |  |||||||||| | |||| ||||||||||||| |||| ||||||||||| ||||||||| | | |  |||||||||||| | || ||||| |||| ||    
T  22626261 acatgttgttacgcttattccacacaatccaagcgcacaataaccaaatcaactgaagaaaggtccgccgcaatttcagaccacctgtgtaataaatgaa 22626162  T
Q  217 ct 218  Q
    ||    
T  22626161 ct 22626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 27116680 - 27116603
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  27116680 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 27116603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 30509554 - 30509477
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||| ||||||||  | | |||||||||| | |||||||| ||||||||||||||  |||||||    
T  30509554 caacctccaacaccatttccctagcaaagctacattaaattccttcaacttcctaacccccaaccctcctaactcctt 30509477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 30549894 - 30549817
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||| ||||||||  | | |||||||||| | |||||||| ||||||||||||||  |||||||    
T  30549894 caacctccaacaccatttccctagcaaagctacattaaattccttcaacttcctaacccccaaccctcctaactcctt 30549817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 226 - 314
Target Start/End: Original strand, 33170291 - 33170379
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacata 314  Q
    |||||||||||||||||| |||| |||  |||||||||| ||||| ||  |||| || |||| ||||||||||||||| | ||||||||    
T  33170291 caacctccaacaccattttcctaacaaagcaatattaaactccctcaaactcctaacacccatccctccatactccttcctcaaacata 33170379  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41404838 - 41404770
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagactt 69  Q
    ||||||||||||| | | ||||||||||  ||||||||| |||||||||||| |||||||||| |||||    
T  41404838 ccaccacatatgattcctaaaaacaaaatggactttcttagcttgaagccaccataaagaatacgactt 41404770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 35122210 - 35122136
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||| ||||| ||| ||| |||||| | ||| ||| |||| ||||||||||||||| |||||||    
T  35122210 cctccaacaccatttccctagtaatgcaacattaaacttcctcaacctcctaacccccaaccctccagactcctt 35122136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 380540 - 380613
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttac 305  Q
    |||||||||||| ||||| ||  || ||||||| ||||| |||| ||| |||||||| ||||||||||||||||    
T  380540 ccaacaccatttgcctagtaagacactattaaactccctcaactgcctgacccccaaacctccatactccttac 380613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 30731821 - 30731744
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | || ||||||||||||||||||||    
T  30731821 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaactcccaaccctccatactcctt 30731744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 303
Target Start/End: Original strand, 42514353 - 42514430
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||| ||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  42514353 caacctccaacacaatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 42514430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 38358103 - 38358177
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| ||  |||||||||| ||| | ||  |||| |||||||| |||||| |||||||    
T  38358103 cctccaacaccatttacctagtaaagcaatattaaactccttcaatctcctaacccccaaacctccaaactcctt 38358177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 314
Target Start/End: Complemental strand, 27165472 - 27165384
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacata 314  Q
    ||||| |||||||||||| || |||||| |||| ||||| |  || ||| |||| || |||| ||||||||||||||| | ||||||||    
T  27165472 caaccgccaacaccatttccccagcaatgcaatgttaaactttctcaacctcctaacacccatccctccatactccttcctcaaacata 27165384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7708862 - 7709039
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacatttt-ccaataattgaaacatagcatt 99  Q
    ||||||||||||| ||||||||||||||   |||||||| |||| ||||||| |||||||  | |||||||| |||| ||||||  |||| ||||| |||    
T  7708862 ccaccacatatgaataccaaaaacaaaattaactttcttagctttaagccaccataaagacaatgacttaacctttttccaatatctgaatcatagaatt 7708961  T
Q  100 ttctttctgcttaaataaactgttgttacgttcattctacacaatccaagcacacagtaaccaaatcagctgaagaaa 177  Q
    |||| | ||||||||||| ||| ||||||| | |||  ||||||||||| ||||||||||||  |  |||||||||||    
T  7708962 ttctctttgcttaaataacctgctgttacgctgatttcacacaatccaaacacacagtaaccggacaagctgaagaaa 7709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 33583935 - 33583857
Alignment:
Q  225 ccaacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| || |||  | |||||||| ||||| |||| ||| |||||||||||||||||||||||    
T  33583935 ccaacctccaacaccatttacttaacaaagctatattaaactccctcaactgccttacccccaaccctccatactcctt 33583857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 11233992 - 11233920
Alignment:
Q  231 tccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||||| |||  ||| |||||| ||||| |||||||| ||||||||||||||| |||||||    
T  11233992 tccaacaccatttacctaacaaagcaaaattaaactccctcaacttcctaacccccaaccctccagactcctt 11233920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 13550750 - 13550871
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaatattccaa 325  Q
    |||||||||||||||||| |||| |||| | |||||||| ||| | ||  ||||||||||||| || ||| |||||||    ||||| ||| | | ||||    
T  13550750 caacctccaacaccatttccctaacaatgctatattaaactccttcaatctcctcacccccaaaccgccacactccttttttaaacaaacagtttgccaa 13550849  T
Q  326 cgtaaccaagatattttcctat 347  Q
    | ||||||||||||||||||||    
T  13550850 cttaaccaagatattttcctat 13550871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 347
Target Start/End: Original strand, 13551203 - 13551324
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaacatacaatattccaa 325  Q
    |||||||||||||||||| |||| |||| | |||||||| ||| | ||  ||||||||||||| || ||| |||||||    ||||| ||| | | ||||    
T  13551203 caacctccaacaccatttccctaacaatgctatattaaactccttcaatctcctcacccccaaaccgccacactccttttttaaacaaacagtttgccaa 13551302  T
Q  326 cgtaaccaagatattttcctat 347  Q
    | ||||||||||||||||||||    
T  13551303 cttaaccaagatattttcctat 13551324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41578146 - 41578069
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttc 78  Q
    ||||||||||||||| ||||||||||||| || |||||| ||||||| ||||  ||||||||  |||||||| |||||    
T  41578146 ccaccacatatgagtcccaaaaacaaaacggattttcttagcttgaaaccaccgtaaagaatgcgacttaactttttc 41578069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 35488470 - 35488545
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcc 301  Q
    |||||||||||||||||||||||| ||  ||| |||||| ||| | |||||||| |||||||| ||||||| ||||    
T  35488470 caacctccaacaccatttacctagtaaagcaacattaaactccttcaacttcctaacccccaaacctccatgctcc 35488545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 45422159 - 45422230
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| |||  || ||||||||||| | ||||  ||||||||||| ||||||| ||||||    
T  45422159 ccaacaccatttacctaacaaagcactattaaattccttcaactgtctcacccccaaacctccattctcctt 45422230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 8065768 - 8065691
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||| ||||||||||| ||  ||| |||||| | | | |||||||| |||||||| ||||||| ||||||    
T  8065768 caacctccaacatcatttacctagtaaagcaacattaaacttcttcaacttcctgacccccaaacctccatgctcctt 8065691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 15522204 - 15522167
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaa 263  Q
    |||||||||||||||||||||||||||| | |||||||    
T  15522204 caacctccaacaccatttacctagcaatgccatattaa 15522167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 26317611 - 26317494
Alignment:
Q  1 ccaccacatatgagtaccaaaaacaaaacagactttcttggcttgaagccactataaagaataagacttaacattttccaataattgaaacatagcattt 100  Q
    |||||||| |||| || |||||||||||   ||||||||  |||  | | ||||||||||||| |||||||| ||||||||||| | ||  ||||  |||    
T  26317611 ccaccacaaatgaatagcaaaaacaaaattaactttcttaactttcacctactataaagaatatgacttaaccttttccaataactaaagtatagtgttt 26317512  T
Q  101 tc-tttctgcttaaataa 117  Q
    || |||||||||||||||    
T  26317511 tcttttctgcttaaataa 26317494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 11196990 - 11197070
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaaca 312  Q
    |||||||||||| |||| |||  |  |||||||||||   ||| |||| ||||||||||||||||||||| ||| ||||||    
T  11196990 ccaacaccatttgcctaacaaagcgctattaaattcctgcaacctccttacccccaaccctccatactccctacacaaaca 11197070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 36804755 - 36804827
Alignment:
Q  229 cctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcc 301  Q
    ||||||||||||||| ||||| ||  |||||||||| ||  | |||||||| |||||||||| ||||| ||||    
T  36804755 cctccaacaccattttcctagtaaagcaatattaaactctttcaacttcctaacccccaaccatccatgctcc 36804827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 17784 - 17855
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||| ||||||||| ||| |||||| ||| | |||||||| ||||||||||||||| |||||||    
T  17784 ccaacaccatttccctagcaatgcaacattaaactccttcaacttcctgacccccaaccctccaaactcctt 17855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 105350 - 105273
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||||||| | |||  |||| ||||| ||||| ||| || | |||||||||||||||||||||||    
T  105350 caacctccaacaccatttacccaacaaagcaatgttaaactccctcaacctcttaacccccaaccctccatactcctt 105273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 177 - 252
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcc 301  Q
    |||||||||||||||||| |||| |||  |||| ||||| || || ||| |||| || ||||||||||||||||||    
T  177 caacctccaacaccatttccctaacaaagcaatgttaaactctctcaacctcctaacacccaaccctccatactcc 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 303
Target Start/End: Original strand, 8243 - 8314
Alignment:
Q  232 ccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    ||||||||||||||||| |||  || ||||||||||| | ||||  ||||||||||| ||||||| ||||||    
T  8243 ccaacaccatttacctaacaaagcactattaaattccttcaactgtctcacccccaaacctccattctcctt 8314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 3885 - 3970
Alignment:
Q  226 caacctccaacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactccttacgcaaac 311  Q
    ||||| ||||||||||||||| | |||  |||| ||||| ||||| ||  || | ||| ||||||||||||||||||| |||||||    
T  3885 caaccgccaacaccatttacccaacaaagcaatgttaaactccctcaatctcgtaacctccaaccctccatactccttccgcaaac 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 15160 - 15091
Alignment:
Q  234 aacaccatttacctagcaattcaatattaaattcccttaacttcctcacccccaaccctccatactcctt 303  Q
    |||||||||||||||| ||  |||||||||| ||| | |||||||| ||||||||  |||||| ||||||    
T  15160 aacaccatttacctagtaaagcaatattaaaatccttcaacttcctaacccccaaaactccatgctcctt 15091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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