View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_19 (Length: 347)
Name: NF3890_low_19
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 2285665 - 2285984
Alignment:
| Q |
18 |
attaaaggaatgtattattcaataacttttatggtggcacgtacatgtgcacaagaagaaagaattaatatatctgttgctcctgattttggtgttattc |
117 |
Q |
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| T |
2285665 |
attaaaggaatgtattattcaataacttttatggtggcacgtacatgtgcacaagaagaaagaattaatatatctgttgctcctgattttggtgttattc |
2285764 |
T |
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| Q |
118 |
ctatacaaacattgtatacaagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatcctggcgt |
217 |
Q |
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| T |
2285765 |
ctatacaaacattgtatacaagtagtggttgggatccaattgcttatggttttaaagctgaatatgatgttgtggaaatggttattcataatcctggtgt |
2285864 |
T |
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| Q |
218 |
tgaagaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttcttt |
317 |
Q |
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| T |
2285865 |
tgaagaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttcttt |
2285964 |
T |
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| Q |
318 |
ttctatataaatctcttcat |
337 |
Q |
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| T |
2285965 |
ttctatataaatctcttcat |
2285984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 334
Target Start/End: Original strand, 2289652 - 2289761
Alignment:
| Q |
222 |
gaagatcctgcttgtggtcctcttattgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttct |
321 |
Q |
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| T |
2289652 |
gaagatcctgcttgtggacttcttaatgattctgttgctcttagga--ctctatcctcctaaagcttctaatagtaagt-tctactttctttctttttct |
2289748 |
T |
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| Q |
322 |
atataaatctctt |
334 |
Q |
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| T |
2289749 |
acataaatctctt |
2289761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 44409144 - 44409193
Alignment:
| Q |
211 |
ctggcgttgaagaagatcctgcttgtggtcctcttattgattctgttgct |
260 |
Q |
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| T |
44409144 |
ctggtgttgaagatgatccagcttgtggtccacttattgattctgttgct |
44409193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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