View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_2 (Length: 690)
Name: NF3890_low_2
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 33047 - 33333
Alignment:
| Q |
8 |
acatcatcacacgaatgcggtttcgttttttacctttggctcaactcatttgatatttgataagatgttaaataattataagatcggacaataaattaat |
107 |
Q |
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| T |
33047 |
acatcatcacacgaatgcggtttcgttttttacctttggctcaactcatttgatatttgataagatgttaaataattataagatcggacaataaattaat |
33146 |
T |
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| Q |
108 |
gttgggtcaattttaaataaatagaaaagaaaa-aacaattcaaaagcacatgtagaaacttccacgaagccaaggtatgaaaaagaggtatatagcgcg |
206 |
Q |
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| T |
33147 |
gttgtgtcaattttaaataaatagaaaagaaaaaaacaattcaaaagcacatgtagaaacttccacgaagccaaggtatgaaaaagaggtatatagcacg |
33246 |
T |
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| Q |
207 |
agaaagtaatataaaatatctacaaacccagacagaaaatagacattagataataaatagaattggaaaagaatttggtgtattgca |
293 |
Q |
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| T |
33247 |
agaaagtaatataaaatatctacaaacccagacagaaaatagacattagattataaatagaattggaaaagcatttggtgtattgca |
33333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 373 - 514
Target Start/End: Original strand, 33413 - 33554
Alignment:
| Q |
373 |
gcattcaaacgaaaacaatatattgaaataaatcacgtgaatcaagacatgcactatttgtttctattaacttgatttagtgtattaaaacttaagtata |
472 |
Q |
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| T |
33413 |
gcattcaaacgaaaacaaaatattgaaataaatcacgtgaatcaagacattcactatttgtttctattaacttgatttagtgtattaaaacttaagtata |
33512 |
T |
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| Q |
473 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
514 |
Q |
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| T |
33513 |
ttaagttaaaatatgcaattgctaacttggtaataatattta |
33554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 527 - 626
Target Start/End: Original strand, 33964 - 34063
Alignment:
| Q |
527 |
catatataatgataatataaatgaatgcctagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
626 |
Q |
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| T |
33964 |
catatataatgataatataaatgaatgcgtagtaaaagtcacttgtcaattgagttaaaaacaattcacgtttaaaaatgaacacttgagttaattatgt |
34063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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