View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_20 (Length: 331)
Name: NF3890_low_20
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 36548005 - 36548270
Alignment:
| Q |
16 |
cattattcggtattcagtatactcaaatattgtttgttaatttagtaaacgtacacatagggtacagagaacaggtttacnnnnnnnnnnnnnnnnnnct |
115 |
Q |
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| T |
36548005 |
cattattcggtattcattatactcaaatattgtttgttaatttagtaaacttacacatagggaacagagaacaggtttacttttggttttttatttttct |
36548104 |
T |
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| Q |
116 |
caataaataactcatcgcaggccgatcctcctattgtgcaccgtgacatcaaatcttccaacattctgttggacaagtttatgaaagccaaggtaaccga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36548105 |
caataaataactcatcgcaggccgatcctcctattgtgcaccgtgacatcaaatcttccaacattctgttggacaagtatatgaaagccaaggtaaccga |
36548204 |
T |
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| Q |
216 |
cctttacctttagttcacaaaaatatgaatagggcttcaatggtacttttatgcattgcattctcc |
281 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36548205 |
cctttgcctttagttcacaaaaatatgaatagggcttcaatggtacttttatgcattgcattctcc |
36548270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 316
Target Start/End: Original strand, 36548252 - 36548280
Alignment:
| Q |
288 |
tttatgcattgcattctcctgttatttgt |
316 |
Q |
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| T |
36548252 |
tttatgcattgcattctcctgttatttgt |
36548280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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