View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_22 (Length: 324)
Name: NF3890_low_22
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 83 - 315
Target Start/End: Complemental strand, 27798448 - 27798216
Alignment:
| Q |
83 |
atcaaatcccatacccacttcacgttttctctctctaaaaacccaggtcaatttcttcttctacacctcattgcttatgtcttagattaatcttttgatt |
182 |
Q |
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| T |
27798448 |
atcaaatcccatacccacttcacgttttctctctctaaaaacccaggtcaatttcttcttctacacctcattgcttatgtcttagattaatcttttgatt |
27798349 |
T |
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| Q |
183 |
acatagatttgagcatattatnnnnnnnnncacaaatttatgnnnnnnnnagttcatgttaacgacccattatcctaaatcctaggttannnnnnnngtg |
282 |
Q |
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| T |
27798348 |
acatagatttgagcatattataaaaaaaaacacaaatttatgttttttttagttcatgttaacgacccattatcctaaatcctaggttattttttttgtg |
27798249 |
T |
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| Q |
283 |
ggtgaaccaagtcaaaggatgtcttggttaatg |
315 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27798248 |
ggtgaaccaagtcaaaggatgtcttggttaatg |
27798216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27798530 - 27798488
Alignment:
| Q |
1 |
cattttatgcatctgttactttgcatgcactcacacacaaaca |
43 |
Q |
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| T |
27798530 |
cattttatgcatctgttactttgcatgcactcacacacaaaca |
27798488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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