View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_27 (Length: 247)
Name: NF3890_low_27
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 36838185 - 36837952
Alignment:
| Q |
7 |
gtgtatatatatacatgatggagccaagaccaagggtttgaaggaaagagaagttggaaggttcaggaaaaccagaacggaaaatgccattatcaaccat |
106 |
Q |
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| T |
36838185 |
gtgtgtatatatacatgatggagccaagaccaagggtttgaaggaaagagaagttggaaggttcaggaaaaccagaacggaaaatgccattatcaaccat |
36838086 |
T |
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| Q |
107 |
agcaaaattgagaggtggaatgaagagatcctcgccgtcaattttgtcacaaacatcaacatcatcaacggttgtagtttgtttgaggttgttatgatca |
206 |
Q |
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| T |
36838085 |
agcaaaattgagaggtggaatgaagagatcctcgccgtcaattttgtcacaaacatcaacatcatcaacggttgtagtttgtttgaggttgttatgatca |
36837986 |
T |
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| Q |
207 |
gagatattcagtttgattttcctacacatctgtg |
240 |
Q |
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| T |
36837985 |
gagatattcagtttgattttcctacacatctgtg |
36837952 |
T |
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