View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3890_low_3 (Length: 657)
Name: NF3890_low_3
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 11 - 639
Target Start/End: Original strand, 43095574 - 43096202
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatcaggtactaacata |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095574 |
caaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatcaggtactaacata |
43095673 |
T |
|
| Q |
111 |
cctctttttatagtattttagtaatgctgaatttcaatacaaatgagaaaagttataattttacactaacatttaatcacaactcttcaatttgctacat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43095674 |
cctctttttatagtattttagtaatgctgaatttcaatacaaatgagaaaagttataattttacactaacatttaatcacaactcttcaatttgctacat |
43095773 |
T |
|
| Q |
211 |
cgtactttacagttttttaactaaaaacaattatgtaaatggcgagttatgattacacttacaatacatataatttattcctataagatttatgataagc |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43095774 |
cgtactttacggttttttaactaaaaacaattatgtaaatggcgagttatgattacacttacaatacatataatttattcctttaagatttatgataagc |
43095873 |
T |
|
| Q |
311 |
aaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatggaggaactcttcaaaagctacagatgccacaattatgg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43095874 |
aaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatggaggaactcttcaaaagctacagatgccacaattatgg |
43095973 |
T |
|
| Q |
411 |
atccaaacaatccccattggggatggaattggcttgacagatggatggcttctaggccatgggaaggacaaaacactaaagatcagaagaatcatagatc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43095974 |
atccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggccatgggaaggacaaaacactaaagatcagaagaatcatagatc |
43096073 |
T |
|
| Q |
511 |
aggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaaatctcctacaagc |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43096074 |
aggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaaatctcctacaagc |
43096173 |
T |
|
| Q |
611 |
caaaaagcaaataatccaaaccaagcttc |
639 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
43096174 |
caaaaagcaaataatccaaaccaagcttc |
43096202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 279 - 635
Target Start/End: Complemental strand, 44187960 - 44187605
Alignment:
| Q |
279 |
tataatttattcctataagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatggaggaa |
378 |
Q |
| |
|
|||||||||||| | |||| ||||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
44187960 |
tataatttattcatttaaggtttatcataagcaaacatgaaatagttt-atatggataataacctatagcttaatttctctaacagcaaacatggaggaa |
44187862 |
T |
|
| Q |
379 |
ctcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttctaggccatgggaagga |
478 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
44187861 |
ctcttcaaaacctacagatgccacaattatggatccaaacaatccccattggagatggaattggcttgatagatggatggcttcaaggccatgggaagga |
44187762 |
T |
|
| Q |
479 |
caaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatc |
578 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44187761 |
caaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatc |
44187662 |
T |
|
| Q |
579 |
aaaatcaagatgacaaaaaatctcctacaagccaaaaagcaaataatccaaaccaag |
635 |
Q |
| |
|
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44187661 |
aaagccaagatgataaaaaatcctctacaagccaaaaagcaaataatccaaaccaag |
44187605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 6094660 - 6094520
Alignment:
| Q |
20 |
aaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatcaggtactaacatacctcttttt |
119 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
6094660 |
aaatccaagcaaaattgttgaccagacaaattgctgctatgagaagagaaaatgctttggcttatgcatcaacacatcaggtactagcatacctcttttc |
6094561 |
T |
|
| Q |
120 |
atagtattttagtaatgctgaatttcaatacaaatgagaaa |
160 |
Q |
| |
|
|||| ||||||||||| || ||||||| |||||||||||| |
|
|
| T |
6094560 |
gtagttttttagtaatgttggatttcaaaacaaatgagaaa |
6094520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 44188508 - 44188359
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatcaggtactaacata |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||| |||||||| ||||||||||| |||||||||||||| ||| |
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|
| T |
44188508 |
caaaggagcaaatccaagcaaaattgttgaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaaata |
44188409 |
T |
|
| Q |
111 |
cctctttttatagtattttagtaatgctgaatttcaatacaaatgagaaa |
160 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||||||||||||||||| |
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|
| T |
44188408 |
cctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaa |
44188359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 44188074 - 44188009
Alignment:
| Q |
168 |
attttacactaacatttaatcacaactcttcaatttgctacatcgtactttacagttttttaactaa |
234 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| |||||||| || ||||| | ||||||||||| |
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|
| T |
44188074 |
attttacactaacattcaattgcaactcttcaattcgctacatcatattttac-gatttttaactaa |
44188009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 34003664 - 34003608
Alignment:
| Q |
190 |
caactcttcaatttgctacatcgtactttacagttttttaactaaaaacaattatgt |
246 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||||||| || |||||| |||||||| |
|
|
| T |
34003664 |
caactcttcaatttgccacatcatatttgacagtttttaaattaaaaataattatgt |
34003608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 274 - 635
Target Start/End: Complemental strand, 32727093 - 32726748
Alignment:
| Q |
274 |
atacatataatttattcctataagatttatgataagcaaacatgaaatagttttatatggataataacatataacttaatttctctaacagcaaacatgg |
373 |
Q |
| |
|
|||| |||||||||||| | |||| ||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
32727093 |
atacttataatttattcatttaaggtttatcataagcaaacatgaaatagttt-atatggataataacctatagcttaatttctctaacagcaaacatgg |
32726995 |
T |
|
| Q |
374 |
aggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatggatggcttctaggccatggg |
473 |
Q |
| |
|
|||||| |||||||| |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
32726994 |
aggaacccttcaaaacctacagatgctacagttatggatccaaacaatccccattggagatggaattggcttca----------------aggccatggg |
32726911 |
T |
|
| Q |
474 |
aaggacaaaacactaaagatcagaagaatcatagatcaggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaag |
573 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32726910 |
aaggacaaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaag |
32726811 |
T |
|
| Q |
574 |
agatcaaaa-tcaagatgacaaaaaatctcctacaagccaaaaagcaaataatccaaaccaag |
635 |
Q |
| |
|
||||||||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32726810 |
agatcaaaagtaaagatgataaaaaatcctctacaagccaaaaagcaaataatccaaaccaag |
32726748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 32727635 - 32727486
Alignment:
| Q |
11 |
caaaggagcaaatccaagcaagattgttgaatagacaaattgctgctatgagaagagaaaaggctttggcttatgcatcaacacatcaggtactaacata |
110 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||||||||||||||| |||| ||| |||||||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
32727635 |
caaaggagcaaatccaagcaaaattgtttaacagacaaattgctgctatgcgaagtgaataggctttgatttatgcatcaatacatcaggtactaaaata |
32727536 |
T |
|
| Q |
111 |
cctctttttatagtattttagtaatgctgaatttcaatacaaatgagaaa |
160 |
Q |
| |
|
|||||||| |||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
32727535 |
cctcttttcgtagttttttagtaatgtaggatttcaatacaaatgagaaa |
32727486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 32727201 - 32727136
Alignment:
| Q |
168 |
attttacactaacatttaatcacaactcttcaatttgctacatcgtactttacagttttttaactaa |
234 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
32727201 |
attttacactaacattcaattgcaactcttcaatttgctacatcatattttac-gatttttaactaa |
32727136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 356 - 459
Target Start/End: Complemental strand, 10769091 - 10768988
Alignment:
| Q |
356 |
ctctaacagcaaacatggaggaactcttcaaaagctacagatgccacaattatggatccaaacaatccccattggggatggaattggcttgacagatgga |
455 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||| ||| | | ||| ||||||||||||||||||| || |||||||||| |||| | || ||||||| |
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|
| T |
10769091 |
ctctaacagcaaacatggaagaattcttcaaaatctataaaccaaacatttatggatccaaacaatcctcactggggatggagttggttagagagatgga |
10768992 |
T |
|
| Q |
456 |
tggc |
459 |
Q |
| |
|
|||| |
|
|
| T |
10768991 |
tggc |
10768988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 13897976 - 13898017
Alignment:
| Q |
185 |
aatcacaactcttcaatttgctacatcgtactttacagtttt |
226 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
13897976 |
aatcacaactcttcaatttgccacatcatattttacagtttt |
13898017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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