View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3890_low_32 (Length: 235)
Name: NF3890_low_32
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_32 |
 | |
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| [»] scaffold0019 (1 HSPs) |
| | |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 11756703 - 11756905
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
11756703 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcaaaatgctgatgtatatctcttggatgatcctttcag |
11756802 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataaggttcattctttattgaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
11756803 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatcgattctacctttctttacaaactgtgattacatcataagattcattctttattgaaa |
11756902 |
T |
|
| Q |
217 |
aat |
219 |
Q |
| |
|
||| |
|
|
| T |
11756903 |
aat |
11756905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 12093218 - 12093016
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
12093218 |
agagaggtgttaatctaagtgggggtcaaaagcagcgaattcaacttgctcgagctctttatcagaattctgatgtatatctcttggatgatcctttcag |
12093119 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataaggttcattctttattgaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
12093118 |
tgctgttgatgcgcacactgcaaaaaaattgtttaatgtaatcacttcttcctttcttaaaaaaccgcgattacatcataagattcattctttattgaaa |
12093019 |
T |
|
| Q |
217 |
aat |
219 |
Q |
| |
|
||| |
|
|
| T |
12093018 |
aat |
12093016 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 11738995 - 11738814
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
11738995 |
agagaggagttaacttgagtgggggtcaaaagcaacgaattcaacttgctcgtgctctttatcagaatgctgacatatatctcttggatgatccattcag |
11738896 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttcttcctttcttaacaaactgcgattacatcataag |
198 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| | ||||||| ||| |||||||| |
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|
| T |
11738895 |
tgctgttgacgcgcacactgcaactaatttgttcaatgtaatgaattcttcctttcttcataaactgcaattgtatcataag |
11738814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 11673078 - 11672929
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| |||||| ||||||| |||||||| || |||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| || || |
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|
| T |
11673078 |
agagaggagttaatttaagtggaggtcaaaaacaacgaattcaacttgctcgtgctctctatcaaaatgctgatttatatctattggatgatccatttag |
11672979 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt |
166 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11672978 |
tgctgttgatgcgcatactgcaaaaaaattgttcaatgtaatgacatctt |
11672929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 11663866 - 11664009
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| ||||| ||||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| || || |
|
|
| T |
11663866 |
agagaggagttaacttaagtggaggtcagaagcagcgaattcaactagctcgtgctctttatcagaatgctgatatatatctcttggatgatccatttag |
11663965 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatga |
160 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| |||||||||| |
|
|
| T |
11663966 |
tgctgttgatgcacatactgcaaaaagtttgtttaatgtaatga |
11664009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 11619045 - 11619189
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||| || || |
|
|
| T |
11619045 |
agagaggagttaatttaagcggaggtcaaaagcaacgaattcaacttgctcgcgctctttataagaatgctgatatatatcttttggatgatccatttag |
11619144 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgac |
161 |
Q |
| |
|
||| |||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
11619145 |
tgccgttgatgcacatactgcaaaaaatttgttaaatgtaatgac |
11619189 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 11631184 - 11631037
Alignment:
| Q |
19 |
agaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtg |
118 |
Q |
| |
|
||||| |||||| ||||||| |||||||| ||| |||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||| || || | |
|
|
| T |
11631184 |
agaggagttaatttaagtggaggtcaaaaacagcgaattcaactagctcgtgctctttatcagaatgctgacatatatctattggatgatccatttagcg |
11631085 |
T |
|
| Q |
119 |
ctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt |
166 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||| |||| |
|
|
| T |
11631084 |
ctgttgatgcacatactgcaaaaaatttgtttgatgtaatgacatctt |
11631037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 11709621 - 11709478
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| |||||| |||| || ||||| |||||| |||||||||| ||||| ||||||||| |||| |||||| ||||||||||||||||||| || || |
|
|
| T |
11709621 |
agagaggagttaatttaagcggaggtcagaagcagcgaattcaactagctcgtgctctttatgagaacgctgatatatatctcttggatgatccgtttag |
11709522 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatga |
160 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||||||||||| |
|
|
| T |
11709521 |
tgctgttgatgcacatacggcaaaaagtttgttcaatgtaatga |
11709478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 31526475 - 31526364
Alignment:
| Q |
26 |
ttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtgctgttga |
125 |
Q |
| |
|
|||| |||||||| || |||||||| || |||||||| |||||||| |||| | |||||||| | |||||| | ||||| |||||||| || ||||| |
|
|
| T |
31526475 |
ttaacctaagtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctccttgatgaccctttcagcgcagttga |
31526376 |
T |
|
| Q |
126 |
tgcgcacactgc |
137 |
Q |
| |
|
||||||||||| |
|
|
| T |
31526375 |
cgcgcacactgc |
31526364 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 166
Target Start/End: Complemental strand, 8064 - 7915
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||| || |||||||| || || |
|
|
| T |
8064 |
agagaggagttaatttaagtggaggtcaaaagcagcgaattcaacttgctcgtgctctttatcagaatgctgatatatatctattagatgatccatttag |
7965 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaatgacttctt |
166 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
7964 |
tgctgttgatgcgcatactgcgaaaaatttgtttaatgtaatgacatctt |
7915 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 44812470 - 44812610
Alignment:
| Q |
17 |
agagaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcag |
116 |
Q |
| |
|
||||||| ||||| ||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| |
|
|
| T |
44812470 |
agagaggggttaacttaagtggaggtcagaagcagcgaattcaacttgctcgtgctctttatcagaatgctgatatatatatcttggatgatccattcag |
44812569 |
T |
|
| Q |
117 |
tgctgttgatgcgcacactgcaaaaaatttgttcaatgtaa |
157 |
Q |
| |
|
|||||||||||| || || || | ||||||||| ||||||| |
|
|
| T |
44812570 |
tgctgttgatgcacaaacagccacaaatttgtttaatgtaa |
44812610 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 13438 - 13568
Alignment:
| Q |
19 |
agaggtgttaatctaagtgggggtcaaaagcagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtg |
118 |
Q |
| |
|
||||| || ||| ||||||| ||||| |||||| |||||||||| ||||| ||| ||||| ||||||||||| ||||||| ||||||||||| || |||| |
|
|
| T |
13438 |
agaggagtaaatttaagtggaggtcagaagcagcgaattcaactggctcgtgctttttatgagaatgctgatatatatctattggatgatccatttagtg |
13537 |
T |
|
| Q |
119 |
ctgttgatgcgcacactgcaaaaaatttgtt |
149 |
Q |
| |
|
|||||||||| || |||||||| || ||||| |
|
|
| T |
13538 |
ctgttgatgctcatactgcaaagaaattgtt |
13568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 5313896 - 5313947
Alignment:
| Q |
83 |
atgctgatgtatatctcttggatgatcctttcagtgctgttgatgcgcacac |
134 |
Q |
| |
|
|||||||| | |||||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
5313896 |
atgctgatatctatctcctcgatgatcctttcagtgctgttgatgcacacac |
5313947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 14372704 - 14372783
Alignment:
| Q |
49 |
cagagaattcaacttgctcgagctctttatcagaatgctgatgtatatctcttggatgatcctttcagtgctgttgatgc |
128 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| || |||||||| ||||||| || ||||||||||| ||||| || ||||| |
|
|
| T |
14372704 |
cagagaatacaaattgctcgcgctctttaccaagatgctgatatatatctatttgatgatccttttagtgccgtggatgc |
14372783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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