View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3890_low_5 (Length: 628)

Name: NF3890_low_5
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3890_low_5
NF3890_low_5
[»] chr8 (5 HSPs)
chr8 (13-610)||(12200222-12200824)
chr8 (13-610)||(12444650-12445252)
chr8 (13-525)||(12195300-12195806)
chr8 (13-525)||(12439728-12440234)
chr8 (13-284)||(4962095-4962373)
[»] chr4 (39 HSPs)
chr4 (475-536)||(50669044-50669105)
chr4 (77-278)||(37826633-37826840)
chr4 (13-350)||(45365796-45366133)
chr4 (77-199)||(7790376-7790498)
chr4 (475-525)||(7908325-7908375)
chr4 (474-527)||(7237753-7237806)
chr4 (475-527)||(7877727-7877779)
chr4 (484-527)||(7771396-7771439)
chr4 (90-276)||(7773481-7773670)
chr4 (484-527)||(7790081-7790124)
chr4 (474-533)||(7813469-7813528)
chr4 (474-533)||(7822958-7823017)
chr4 (483-532)||(37827024-37827073)
chr4 (483-536)||(50250820-50250873)
chr4 (475-527)||(7773848-7773900)
chr4 (77-191)||(7237386-7237500)
chr4 (475-533)||(7765607-7765665)
chr4 (77-199)||(7771691-7771813)
chr4 (475-533)||(7786429-7786487)
chr4 (226-276)||(7908553-7908603)
chr4 (475-533)||(48852658-48852716)
chr4 (151-196)||(7878045-7878090)
chr4 (77-134)||(48853042-48853099)
chr4 (476-533)||(49048605-49048662)
chr4 (474-530)||(7800629-7800685)
chr4 (66-134)||(48864396-48864464)
chr4 (176-276)||(48898959-48899059)
chr4 (79-134)||(48147358-48147413)
chr4 (250-331)||(48705198-48705276)
chr4 (483-533)||(48170601-48170651)
chr4 (483-528)||(48147756-48147801)
chr4 (475-528)||(48898701-48898754)
chr4 (77-134)||(49038521-49038578)
chr4 (77-134)||(49043811-49043868)
chr4 (159-196)||(50669384-50669421)
chr4 (247-279)||(48852903-48852935)
chr4 (247-279)||(49044002-49044034)
chr4 (482-534)||(49044225-49044277)
chr4 (379-451)||(49048508-49048580)
[»] chr7 (1 HSPs)
chr7 (483-536)||(48883790-48883843)
[»] chr6 (3 HSPs)
chr6 (484-533)||(21979678-21979727)
chr6 (223-279)||(21979420-21979476)
chr6 (485-533)||(21015801-21015849)
[»] chr5 (2 HSPs)
chr5 (77-191)||(9120067-9120181)
chr5 (91-189)||(179364-179462)
[»] chr3 (5 HSPs)
chr3 (160-284)||(11024223-11024347)
chr3 (485-532)||(11005994-11006041)
chr3 (485-532)||(11024569-11024616)
chr3 (66-196)||(47451532-47451662)
chr3 (77-134)||(11024146-11024203)
[»] chr1 (4 HSPs)
chr1 (481-528)||(24310168-24310215)
chr1 (160-275)||(24340634-24340749)
chr1 (160-275)||(24352999-24353114)
chr1 (483-528)||(24367144-24367189)


Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Complemental strand, 12200824 - 12200222
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12200824 aatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 12200725  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12200724 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccat 12200625  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaacca---tgataacgagaagt 309  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||    
T  12200624 ggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgatgataatgagaagt 12200525  T
Q  310 taaccaatgaata--accccattaaagaataatcctgctttggaaggtttgggactatccctggtattaaaataagtgatgtgaggaccttcaatttcat 407  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  12200524 taaccaatgaataacaccccattaaagaataatcctgctttggaaggtttgggatgatccctggtattaaaagaagtgatgtgaggaccttcaatttcat 12200425  T
Q  408 tccactttttatctctcaatgagaaaaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttga 507  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12200424 tccacttgttatctctcaatgagaaaaattccaactttgatgaagttttcaccaaggctggacaaagggacaataaaaccaccaagtaatcatctcttga 12200325  T
Q  508 ccggtcataaccaaaaccatatagatgatgtcgatggaatgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatgga 607  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  12200324 ccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatgga 12200225  T
Q  608 ttc 610  Q
    |||    
T  12200224 ttc 12200222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 13 - 610
Target Start/End: Complemental strand, 12445252 - 12444650
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12445252 aatatcaccactttttgtagagtatataggggaaaagcaatgcatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 12445153  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  12445152 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaattctccaaatacccacaaaccataatacataagaccat 12445053  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaacca---tgataacgagaagt 309  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||    
T  12445052 ggttgaaatcatctggaagaagtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgatgataatgagaagt 12444953  T
Q  310 taaccaatgaata--accccattaaagaataatcctgctttggaaggtttgggactatccctggtattaaaataagtgatgtgaggaccttcaatttcat 407  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  12444952 taaccaatgaataacaccccattaaagaataatcctgctttggaaggtttgggatgatccctggtattaaaagaagtgatgtgaggaccttcaatttcat 12444853  T
Q  408 tccactttttatctctcaatgagaaaaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttga 507  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12444852 tccacttgttatctctcaatgagaaaaattccaactttgatgaagttttcaccaaggctggacaaagggacaataaaaccaccaagtaatcatctcttga 12444753  T
Q  508 ccggtcataaccaaaaccatatagatgatgtcgatggaatgtatgtaacttcaaatcaaaaggagacaaaggtannnnnnngtgaaacctagaggatgga 607  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  12444752 ccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtatttttttgtgaaacctagaggatgga 12444653  T
Q  608 ttc 610  Q
    |||    
T  12444652 ttc 12444650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 525
Target Start/End: Complemental strand, 12195806 - 12195300
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||| ||  |  ||||||||    
T  12195806 aatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttgtttgtat 12195707  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
      ||||||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |   |||||||    
T  12195706 tctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccat 12195607  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgataacgagaagttaa 312  Q
    ||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    ||||||| ||||||  ||    
T  12195606 ggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttccaatggtattttatgataaggagaagccaa 12195507  T
Q  313 ccaatgaataaccccattaaagaataatcctgctttggaaggtttgggactatccctggtattaaaataagtgatgtgaggaccttcaatttcattccac 412  Q
    |||||||||| |||||||||||||| ||||| ||      | |||| || || || ||| ||| ||||||||||||||||||||||||||||||||||||    
T  12195506 ccaatgaatagccccattaaagaatgatcctcct------gctttgcgattagccgtggcattcaaataagtgatgtgaggaccttcaatttcattccac 12195413  T
Q  413 tttttatctctcaatgagaaaaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggt 512  Q
    || ||||||||||||||||||||||| || |  |||||||||||||  |||| ||||  |  |||||||||||| |||||||||||||||||| | | ||    
T  12195412 ttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgt 12195313  T
Q  513 cataaccaaaacc 525  Q
    |||||||||||||    
T  12195312 cataaccaaaacc 12195300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 525
Target Start/End: Complemental strand, 12440234 - 12439728
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacgaacgcagtttgtat 112  Q
    ||||||||||||||||||||||||||  |||||||| ||| ||||||||||| |||||||||||||||||||||| |||||||| ||  |  ||||||||    
T  12440234 aatatcaccactttttgtagagtatacgggggaaaaccaaggtatgtcattgtcaataggaattacaagagtcttagtccaagatgattgttgtttgtat 12440135  T
Q  113 attttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggaccat 212  Q
      ||||||| ||||||||||||  ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |   |||||||    
T  12440134 tctttcatctcccatatttcaactgtccgattatcaaaattcatattccatagactgagaaattttccaaatacccacaaaccataatgctctggaccat 12440035  T
Q  213 ggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgataacgagaagttaa 312  Q
    ||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    ||||||| ||||||  ||    
T  12440034 ggtcgtaatcatctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataacttccaatggtattttatgataaggagaagccaa 12439935  T
Q  313 ccaatgaataaccccattaaagaataatcctgctttggaaggtttgggactatccctggtattaaaataagtgatgtgaggaccttcaatttcattccac 412  Q
    |||||||||| |||||||||||||| ||||| ||      | |||| || || || ||| ||| ||||||||||||||||||||||||||||||||||||    
T  12439934 ccaatgaatagccccattaaagaatgatcctcct------gctttgcgattagccgtggcattcaaataagtgatgtgaggaccttcaatttcattccac 12439841  T
Q  413 tttttatctctcaatgagaaaaattccaactttgatgaagttttcataaaggatggacaaagggacaataaaaccaccaagtaatcatctcttgaccggt 512  Q
    || ||||||||||||||||||||||| || |  |||||||||||||  |||| ||||  |  |||||||||||| |||||||||||||||||| | | ||    
T  12439840 ttattatctctcaatgagaaaaattctaaatacgatgaagttttcactaaggttggatcataggacaataaaacgaccaagtaatcatctcttaatccgt 12439741  T
Q  513 cataaccaaaacc 525  Q
    |||||||||||||    
T  12439740 cataaccaaaacc 12439728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 4962095 - 4962373
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgccaataggaattacaagagtcttggtccaagacga---acgcagtttg 109  Q
    ||||||||||||||||||||| ||||| ||||||||| ||   |||| |    |||||||||||| ||||||||| ||||| |||||   | ||||||||    
T  4962095 aatatcaccactttttgtagaatatattggggaaaagaaacaaatgttacgatcaataggaattagaagagtcttagtccacgacgacgaatgcagtttg 4962194  T
Q  110 tatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataa--tacata-- 205  Q
    |||  ||||||| ||||||||||||   |   |||   | ||| |||   ||||||||| ||||||||||||||||||||||||||||||  |||| |      
T  4962195 tattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttacagaca 4962294  T
Q  206 ggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttcca 284  Q
    ||  ||| ||  |||| ||  |||||||| ||||||| ||||||||||||||||||||||||| ||| |||||| ||||    
T  4962295 ggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaagacaataataacatcca 4962373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 475 - 536
Target Start/End: Complemental strand, 50669105 - 50669044
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 536  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50669105 ggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 50669044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 278
Target Start/End: Original strand, 37826633 - 37826840
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    ||||||||||| |||||||||||| |||||||||||  ||||||| ||| || || ||| || ||||||| |     |||   ||||||||| |||||||    
T  37826633 acaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaatt 37826732  T
Q  177 ctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaa---ga---ggtatctctaccaatttcctttccattaaatcaaaggc 270  Q
    |||||||||||||||||||| ||||   |||| ||| ||  |||| ||||||||   ||   |||||||||| || ||||||||||||||||| ||||||    
T  37826733 ctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctggaactggaacgggtatctctaacagtttcctttccattaaattaaaggc 37826832  T
Q  271 aacaataa 278  Q
    ||||||||    
T  37826833 aacaataa 37826840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 45365796 - 45366133
Alignment:
Q  13 aatatcaccactttttgtagagtatataggggaaaagcaatgtatgtcattgcca---ataggaattacaagagtcttggtccaagacgaacgcagtttg 109  Q
    ||||||||| |||||||||||| ||| |||||||||| | ||  ||  | |||||   |||||||  ||  ||||||| |||||||||||||||| |||     
T  45365796 aatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcacttta 45365895  T
Q  110 tatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaatacccacaaaccataatacataggac 209  Q
    |||  ||||||| ||||||||||||  || | ||||||| ||| ||||  ||| | ||| | ||||||||||||||||||||||||| |||    |||      
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtgaggtt 45365995  T
Q  210 catggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgataacgagaagt 309  Q
    || |||| || | |||||||| | | || |  |  | ||||||||| ||||||||||||| || |||||| |||||| | |||||| |||   || |||     
T  45365996 cacggttaaactcatctggaaaatgaatataaaaaagtttcctttcgattaaatcaaaggaaataataacatccaatcgcaaaccaagat---gaaaagc 45366092  T
Q  310 taaccaatgaataaccccattaaagaataatcctgctttgg 350  Q
     |||||||||||| |||||||||| || || |||| |||||    
T  45366093 aaaccaatgaatagccccattaaaaaacaaccctggtttgg 45366133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 7790498 - 7790376
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | ||||||| ||| | ||   |||| ||| |||||||    
T  7790498 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaatt 7790399  T
Q  177 ctccaaatacccacaaaccataa 199  Q
    |||||||||||||||||| ||||    
T  7790398 ctccaaatacccacaaactataa 7790376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 475 - 525
Target Start/End: Complemental strand, 7908375 - 7908325
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaacc 525  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  7908375 ggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 7237753 - 7237806
Alignment:
Q  474 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 527  Q
    |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  7237753 gggaaaatacaaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 7877779 - 7877727
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 527  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||    
T  7877779 ggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccat 7877727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  484 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 527  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 7773481 - 7773670
Alignment:
Q  90 tccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaataccca 189  Q
    ||||||||||| ||| |||||||  ||||||| ||||||||||||  || | |||| ||  || | ||  ||||| ||| ||| ||||||||||||||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  190 caaaccataata---cataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||||||| |||    ||  | || |||||  | || || ||||||||| ||||| | |||||||||||||||||||||||||| ||||||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaat 7773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 527
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  484 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 527  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 7813528 - 7813469
Alignment:
Q  474 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    |||| |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  7813528 gggaaaatacaaccagcacgtaatcatctcttgactggtcataaccaaaaccatatagat 7813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 533
Target Start/End: Complemental strand, 7823017 - 7822958
Alignment:
Q  474 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    |||| |||| ||||| || |||||||||||||||| ||||||||||||||||||||||||    
T  7823017 gggaaaatacaaccagcacgtaatcatctcttgactggtcataaccaaaaccatatagat 7822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 532
Target Start/End: Original strand, 37827024 - 37827073
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 532  Q
    |||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  37827024 aaacaaccaagtaatcatctctagactggtcataaccaaaaccatataga 37827073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 536
Target Start/End: Original strand, 50250820 - 50250873
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 536  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    
T  50250820 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgat 50250873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 527
Target Start/End: Original strand, 7773848 - 7773900
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccat 527  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||||||||    
T  7773848 ggacaatacaaccaccaagtaatcatctcttacctggtcataaccaaaaccat 7773900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 191
Target Start/End: Original strand, 7237386 - 7237500
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || |||||| ||||| ||| |||||||  ||||||| |||||||| |||  || | ||||||| ||| |  |  ||||||||| |||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaatt 7237485  T
Q  177 ctccaaatacccaca 191  Q
    |||||||||||||||    
T  7237486 ctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 7765665 - 7765607
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    |||||||||||||||||  ||||||||||| ||| | || |||||||||||||||||||    
T  7765665 ggacaataaaaccaccacataatcatctctagactgatcgtaaccaaaaccatatagat 7765607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 199
Target Start/End: Complemental strand, 7771813 - 7771691
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| || ||||| |||||| ||| |||||||  ||||||| |||||||| |||  || | ||||||| ||| | ||   |||| ||| |||||||    
T  7771813 acaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaatt 7771714  T
Q  177 ctccaaatacccacaaaccataa 199  Q
    |||||||||||||||||| ||||    
T  7771713 ctccaaatacccacaaactataa 7771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 7786487 - 7786429
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    |||||||||||||||||  ||||||||||| ||| | || |||||||||||||||||||    
T  7786487 ggacaataaaaccaccacataatcatctctagactgatcgtaaccaaaaccatatagat 7786429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 7908603 - 7908553
Alignment:
Q  226 tggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaat 276  Q
    ||||| ||||||||| | ||| |||||||||||||||||||||||||||||    
T  7908603 tggaataggtatctcaaacaacttcctttccattaaatcaaaggcaacaat 7908553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 533
Target Start/End: Complemental strand, 48852716 - 48852658
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    ||||| |||||| ||||||||||||||  ||||| ||||||| ||||||||||||||||    
T  48852716 ggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagat 48852658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 7878090 - 7878045
Alignment:
Q  151 attcatattccatagactcagaaattctccaaatacccacaaacca 196  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||    
T  7878090 attcatagcccatagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 48853099 - 48853042
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||||||| |||||||  ||||||  ||||||||||||    
T  48853099 acaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaa 48853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 476 - 533
Target Start/End: Original strand, 49048605 - 49048662
Alignment:
Q  476 gacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    ||||||| ||||||||| ||||||||| ||||  ||||||| ||||||||||||||||    
T  49048605 gacaatacaaccaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 49048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 474 - 530
Target Start/End: Complemental strand, 7800685 - 7800629
Alignment:
Q  474 gggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatata 530  Q
    |||| |||| ||||| || ||| |||||||||||| |||||||||||||||||||||    
T  7800685 gggaaaatacaaccagcacgtactcatctcttgactggtcataaccaaaaccatata 7800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 48864464 - 48864396
Alignment:
Q  66 caataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    |||||||||  |||||| |||| |||||||||||| ||| |||||||  ||||||| ||||||||||||    
T  48864464 caataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 48899059 - 48898959
Alignment:
Q  176 tctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaa 275  Q
    |||||||| |||||||||||| ||| |  ||||  ||| |  |||| ||||||| |||  ||||||| || |||||||||| ||||||||||||||||||    
T  48899059 tctccaaagacccacaaaccacaatcctgaggaatatgttccaaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaa 48898960  T
Q  276 t 276  Q
    |    
T  48898959 t 48898959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 134
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  79 aagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||| |||||||||||| ||| |||||||  ||||||| ||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 331
Target Start/End: Original strand, 48705198 - 48705276
Alignment:
Q  250 cctttccattaaatcaaaggcaacaataacttccaatggtaaaccatgataacgagaagttaaccaatgaataaccccatta 331  Q
    |||||||||||||||||||||||||||||| |||  | ||||| ||||   |||| |||  |||||||||||| ||||||||    
T  48705198 cctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatg---acgataagccaaccaatgaatagccccatta 48705276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 48170601 - 48170651
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    ||||||| ||||||||||||||| || | ||||| ||||||||||||||||    
T  48170601 aaaccactaagtaatcatctcttaactgatcatacccaaaaccatatagat 48170651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 48147756 - 48147801
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 528  Q
    |||||||||||||||||||| || || ||||||| |||||||||||    
T  48147756 aaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 528
Target Start/End: Complemental strand, 48898754 - 48898701
Alignment:
Q  475 ggacaataaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 528  Q
    ||||||||||||||| |||||||||||| || || | ||||| |||||||||||    
T  48898754 ggacaataaaaccactaagtaatcatctgttaactgatcatacccaaaaccata 48898701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 49038521 - 49038578
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||| | | |||||||  ||||||| ||||||||||||    
T  49038521 acaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 49043811 - 49043868
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| ||||| |||||| ||| |||||||  ||||||| ||||||||||||    
T  49043811 acaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaa 49043868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 50669421 - 50669384
Alignment:
Q  159 tccatagactcagaaattctccaaatacccacaaacca 196  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  50669421 tccaaagactgagaaattctccaaatacccacaaacca 50669384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 48852935 - 48852903
Alignment:
Q  247 tttcctttccattaaatcaaaggcaacaataac 279  Q
    |||||||||||||||||||||||| ||||||||    
T  48852935 tttcctttccattaaatcaaaggccacaataac 48852903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 49044002 - 49044034
Alignment:
Q  247 tttcctttccattaaatcaaaggcaacaataac 279  Q
    ||||||||| |||||||||||||||||||||||    
T  49044002 tttcctttcaattaaatcaaaggcaacaataac 49044034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 534
Target Start/End: Original strand, 49044225 - 49044277
Alignment:
Q  482 aaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatg 534  Q
    ||||||||||| ||||||||| ||||| | ||||| ||||||| |||||||||    
T  49044225 aaaaccaccaaataatcatctgttgacggatcatacccaaaacaatatagatg 49044277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 49048508 - 49048580
Alignment:
Q  379 ataagtgatgtgaggaccttcaatttcattccactttttatctctcaatgagaaaaattccaactttgatgaa 451  Q
    ||||| |||||||| ||| |||||||| |||||  | ||||||||||| |||||||| ||||| | |||||||    
T  49048508 ataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaatgtgatgaa 49048580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 483 - 536
Target Start/End: Complemental strand, 48883843 - 48883790
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgat 536  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  48883843 aaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgat 48883790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Original strand, 21979678 - 21979727
Alignment:
Q  484 aaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 21979420 - 21979476
Alignment:
Q  223 atctggaagaggtatctctaccaatttcctttccattaaatcaaaggcaacaataac 279  Q
    |||||||||||| ||||| |  | ||||||||| |||||||||||||||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataac 21979476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 21015849 - 21015801
Alignment:
Q  485 accaccaagtaatcatctcttgaccggtcataaccaaaaccatatagat 533  Q
    |||||||| ||||||||| ||||  ||||||| ||||||||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 21015801  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 9120181 - 9120067
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaatt 176  Q
    |||||||| ||  ||||||| ||| ||| |||||||  ||||||| ||||||||||||  || | |||| |||||| ||||  ||||| ||| |||||||    
T  9120181 acaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaatt 9120082  T
Q  177 ctccaaatacccaca 191  Q
    |||||||||||||||    
T  9120081 ctccaaatacccaca 9120067  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 179462 - 179364
Alignment:
Q  91 ccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactcagaaattctccaaataccca 189  Q
    |||||| ||| ||| |||||||  ||||||| ||||||||||||  || | ||||||| ||| ||||  ||||| ||| ||||||| ||||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 160 - 284
Target Start/End: Original strand, 11024223 - 11024347
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||||||||||||| ||||||| || ||| ||||||  |||| |  |||  |||||||| ||| ||||| |  | || |||||||| |    
T  11024223 ccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctggaaaaggcatctccaaaagttccctttccact 11024322  T
Q  260 aaatcaaaggcaacaataacttcca 284  Q
    ||||||||||||| |||||| ||||    
T  11024323 aaatcaaaggcaataataacatcca 11024347  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 11005994 - 11006041
Alignment:
Q  485 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 532  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  11005994 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 532
Target Start/End: Original strand, 11024569 - 11024616
Alignment:
Q  485 accaccaagtaatcatctcttgaccggtcataaccaaaaccatataga 532  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||    
T  11024569 accaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 196
Target Start/End: Original strand, 47451532 - 47451662
Alignment:
Q  66 caataggaattacaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatag 165  Q
    |||||||||  |||||||||||   ||||||||||   | |||||||  ||||||| ||||||||||||   | | ||||| | ||| || |  || |||    
T  47451532 caataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccagaacccttag 47451631  T
Q  166 actcagaaattctccaaatacccacaaacca 196  Q
    ||| |||||||||||||||||||||||||||    
T  47451632 actaagaaattctccaaatacccacaaacca 47451662  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  77 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaa 134  Q
    ||||||||||| |||||||||||| ||| |||||||  ||||||  ||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 528
Target Start/End: Complemental strand, 24310215 - 24310168
Alignment:
Q  481 taaaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 528  Q
    |||||| |||||||||||||||||||||  ||||||||||||||||||    
T  24310215 taaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 24340749 - 24340634
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||| ||| | ||||||| |||||| ||  | ||  ||||||||  |||| |||||| ||||| |||||||| | ||||||||| | |    
T  24340749 ccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgact 24340650  T
Q  260 aaatcaaaggcaacaa 275  Q
    || |||||||||||||    
T  24340649 aattcaaaggcaacaa 24340634  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 275
Target Start/End: Complemental strand, 24353114 - 24352999
Alignment:
Q  160 ccatagactcagaaattctccaaatacccacaaaccataatacataggaccatggttgaaataatctggaagaggtatctctaccaatttcctttccatt 259  Q
    ||||||||| |||||| ||| | ||||||| |||||| ||  | ||  ||||||||  |||| |||||| ||||| |||||||| | ||||||||| | |    
T  24353114 ccatagacttagaaatcctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttcgact 24353015  T
Q  260 aaatcaaaggcaacaa 275  Q
    || |||||||||||||    
T  24353014 aattcaaaggcaacaa 24352999  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 24367189 - 24367144
Alignment:
Q  483 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccata 528  Q
    |||||||||||||||||||| |||||  |||||| |||||||||||    
T  24367189 aaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

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