View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3890_low_7 (Length: 573)
Name: NF3890_low_7
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 30 - 573
Target Start/End: Complemental strand, 50141316 - 50140775
Alignment:
| Q |
30 |
cactcacctttgcctatatttagctttagtttatggtcctacggcataatctcatctcaacgatagatagatgggcatttatctttatacttgattgatg |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
50141316 |
cactcacctttgcctatatttagctttagtttatggtcctacggcataatctcatctcaacgatagatagatgggcatttatctttacacttgattgatg |
50141217 |
T |
|
| Q |
130 |
aactaaatttcctcatcaagtgaatgttactttacatcacatggagaaaagagatggcaaaatagcatcaaagaaagcatatttgattagagcattgaat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
50141216 |
aactaaatttcctcatcaagtgaatgttactttacatcacatggagaaaagagatggcaaaatagcatcaaagaaagcatatttgattagagcattaaat |
50141117 |
T |
|
| Q |
230 |
ttgtcttgtctaaccaaagttagataccaaggacgtgtacgtgtgtgtaattgttaattcatacttcttcgattagagttatagaataaatgccnnnnnn |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50141116 |
ttgtcttgtctaaccaaagttagataccaaggacgtgtacgtgtgtgtaattgttaattcatacttcttcgattagagttatagaataaatgac--tttt |
50141019 |
T |
|
| Q |
330 |
nnnnnaaccaaccatattgatctatgaatgtgtgagacgagtttgctatagttcacggatatatcaaaattgtaaacacatcttcaaatatatatttgat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
50141018 |
tttttaaccaaccatattgatctatgaatgtgtgagacgagtttgctatagttcacggatgtatcaaaattgtaaacacatttttaaatatatatttgat |
50140919 |
T |
|
| Q |
430 |
tagtcattttagtctacatatatgtttttaagttgttaatttaatcttcaaatgtgttcttcgttagttgatttaattgaaaaatattataacataagag |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50140918 |
tagtcattttagtctacatatatgtttttaaattgttaatttaatcttcaaatgtgttcttcgttagttgatttaattgaaaaatattataacataagag |
50140819 |
T |
|
| Q |
530 |
gctctaagaaggtatttgcaattagagtgacaacatcacacact |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50140818 |
gctctaagaaggtatttgcaattagagtgacaacatcacacact |
50140775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University