View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3890_low_9 (Length: 537)
Name: NF3890_low_9
Description: NF3890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3890_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 28 - 537
Target Start/End: Complemental strand, 9214882 - 9214376
Alignment:
| Q |
28 |
ttcctttgtctctctctctgtttaactatttttatttaaaaatttaaatatttatgcgttgtcggtttttgtttggatgaggccgaatataacacgttga |
127 |
Q |
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| T |
9214882 |
ttcctttgtctctctctctgtttcactatttttatttaaaaatttaaatatttatgtgttgtcggtttttgtttggatgcgcctgaatataacacgttga |
9214783 |
T |
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| Q |
128 |
gctctagcccatgcaaatttacctcactaaaagttcatccatttaatgaacaaaatttttatggtcacaaaatttatgtgtagagacaaacatagacaga |
227 |
Q |
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| T |
9214782 |
gctctagcccatgcaaatttacctcactaaaagttcatccatttaatgaacaaaacttttatggtcacaaaatttatgtgtagagacaaacatagacagg |
9214683 |
T |
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| Q |
228 |
tacatttatcaccaaaatgtaaaattagtttttgattattatatcattaaaaagttgcctcgttatatatatgcctaatcactatactataccccattga |
327 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9214682 |
tacatttgtcaccaaaatgtaaaattagtttttgattat---atcattaaaaaggtgcctcgttatatatatgcctaatcactatactataccccattga |
9214586 |
T |
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| Q |
328 |
attttgatttctttgtccgccatacacaagaccccacctcaaacaccacttagcattatctatcatttatatacgtcactgcaccgctcgctttcacttc |
427 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
9214585 |
attttgatttctttgtcctccatacacaagaccccacctcaaacaccacttagcattatctatcatttatatgcgtcattgcacctctcgctttcacttc |
9214486 |
T |
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| Q |
428 |
acgtgctcatgcctaatatagtaccaatgtggcactattccacctcaccattatttgtacccaaaatgtaacactcttgctagcttccccatataaatac |
527 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9214485 |
acgtgcttatgcctaatatagtaccaatgtggcactattccacctcaccattatttgtacccaaaatgtaacactcttgcttgcttccccatataaatac |
9214386 |
T |
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| Q |
528 |
aagtaaaccc |
537 |
Q |
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| T |
9214385 |
aagtaaaccc |
9214376 |
T |
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