View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_11 (Length: 325)
Name: NF3891_high_11
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 10838591 - 10838886
Alignment:
| Q |
11 |
catcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacaatagaagccgcggtttc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
10838591 |
catcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggtttc |
10838690 |
T |
|
| Q |
111 |
tggaaactgctccatgattaaaagcttagcaccacggtactcnnnnnnnnnnnnnnnnngagtgtaccaaataatacactgaagaaccacaacttgaacc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10838691 |
tggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaacc |
10838790 |
T |
|
| Q |
211 |
attaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10838791 |
attaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatc |
10838886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 33102491 - 33102227
Alignment:
| Q |
11 |
catcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacaatagaagccgcggtttc |
110 |
Q |
| |
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||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| ||||||||| || ||||| |
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| T |
33102491 |
catcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttc |
33102392 |
T |
|
| Q |
111 |
tggaaactgctccatgattaaaagcttagcaccacggtactcnnnnnnnnnnnnnnnnngagtgtaccaaataatacactgaagaaccacaacttgaacc |
210 |
Q |
| |
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|||||||| ||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
33102391 |
aggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaacc |
33102292 |
T |
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| Q |
211 |
attaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgtt |
275 |
Q |
| |
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|| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| |
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| T |
33102291 |
ataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgtt |
33102227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 52716618 - 52716501
Alignment:
| Q |
170 |
gagtgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaa |
269 |
Q |
| |
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||||||||||||||| || |||||||| |||| ||| ||||| | | ||||| |||||||||||||||| |||| | ||| ||||||||||| | |
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| T |
52716618 |
gagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagagggattcccataacaag |
52716519 |
T |
|
| Q |
270 |
agtgttaggaagtgttga |
287 |
Q |
| |
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||||||||||| ||||| |
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| T |
52716518 |
tgtgttaggaagagttga |
52716501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 25038952 - 25038822
Alignment:
| Q |
175 |
taccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgt |
274 |
Q |
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|||||||| ||||| |||||||| |||| ||| |||||||| ||||||||| | ||||||||||| | | | ||||||||||||||||||||||||| |
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| T |
25038952 |
taccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataaccaaagtgt |
25038853 |
T |
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| Q |
275 |
taggaagtgttgataatgaaaagattgttat |
305 |
Q |
| |
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| ||||||||||| | |||||||| |||||| |
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| T |
25038852 |
ttggaagtgttgagagtgaaaagagtgttat |
25038822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 287
Target Start/End: Complemental strand, 34971119 - 34971007
Alignment:
| Q |
175 |
taccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgt |
274 |
Q |
| |
|
|||||||| ||||| |||||||| || | ||||||||| | | |||| |||| |||||||||||| | | ||||||||||| |||||||| | |||| |
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| T |
34971119 |
taccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacattcctttcaacaaaggaatgcccataacaagtgtgt |
34971020 |
T |
|
| Q |
275 |
taggaagtgttga |
287 |
Q |
| |
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||||||||||||| |
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| T |
34971019 |
taggaagtgttga |
34971007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 2035812 - 2035863
Alignment:
| Q |
245 |
ttaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
296 |
Q |
| |
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||||||| |||||||| | || |||||| ||||||||||||||||||||||| |
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| T |
2035812 |
ttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaa |
2035863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 45362138 - 45362020
Alignment:
| Q |
172 |
gtgtaccaaataatacactgaagaaccacaacttgaaccattaagctacctgaataatcacca---tacatagcaattaacaa-aggaattcccataacc |
267 |
Q |
| |
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||||||||||||||||||||||| ||||||| ||| ||||| || || || ||| | |||||| |||||| || || | || ||| |||||||||||| |
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| T |
45362138 |
gtgtaccaaataatacactgaaggaccacaatttgtaccatcaaactcccagaaaattcaccaccgtacata-catttgagaagagggattcccataacc |
45362040 |
T |
|
| Q |
268 |
aaagtgttaggaagtgttga |
287 |
Q |
| |
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|||||||| || |||||||| |
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| T |
45362039 |
aaagtgtttgggagtgttga |
45362020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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