View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3891_high_15 (Length: 234)
Name: NF3891_high_15
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_15 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 34133268 - 34133500
Alignment:
| Q |
2 |
catcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgt |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34133268 |
catcatcatgttcatcagaactccgaggaactaatgtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgt |
34133367 |
T |
|
| Q |
102 |
atcataataaccagtaggattgatctcatctctagcaaccttcttcttctcctccagactctgagcaaagaacaatctagaagcttcctcaagtctctgc |
201 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34133368 |
atcataataaccagtaggattgacctcatctctagcaaccttcttcttctcctccaaactctgagcaaagaacaatctagaagcttcctcaagtctctgc |
34133467 |
T |
|
| Q |
202 |
cttagactcaaagggactccgtggtttgtgact |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
34133468 |
cttagactcaaagggactccatggtttgtgact |
34133500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 34137180 - 34137411
Alignment:
| Q |
3 |
atcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgta |
102 |
Q |
| |
|
|||||| | |||||||||| | ||||||| ||||| ||||| | | |||||||||| ||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
34137180 |
atcatcgttttcatcagaattcagaggaaccaaagtgggatcgttggcgagaaaatcaagcacttctttccagtccctaacatttttggtgtgttctgta |
34137279 |
T |
|
| Q |
103 |
tcataataaccagtaggattgatctcatctctagcaaccttcttcttctcctccagactctgagcaaagaacaatctagaagcttcctcaagtctctgcc |
202 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
34137280 |
tcataataaccagttggattgatttcatctctagcaaccttcctcttctcctccaaactctgagcaaagaacaatttagcagcttcatcaagtctctgcc |
34137379 |
T |
|
| Q |
203 |
ttagactcaaagggactccgtggtttgtgact |
234 |
Q |
| |
|
| |||||| |||||||||| |||||||||||| |
|
|
| T |
34137380 |
taagactcgaagggactccatggtttgtgact |
34137411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 234
Target Start/End: Original strand, 34140894 - 34141074
Alignment:
| Q |
54 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcc |
153 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||| | || || |||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34140894 |
aaaatcaaacacttctttcatgtctctaacattcttggtgagttcagtgtcataataaccagttggaatgatctcatctctagcaaccttcttcttctcc |
34140993 |
T |
|
| Q |
154 |
tccagactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggactccgtggtttgtgact |
234 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34140994 |
tccaaactctgagcaaagaacaatctagcagcttcatcaagcctctgcctgagactcaaagggactccatggtttgtgact |
34141074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 54 - 218
Target Start/End: Original strand, 34127047 - 34127211
Alignment:
| Q |
54 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataataaccagtaggattgatctcatctctagcaaccttcttcttctcc |
153 |
Q |
| |
|
|||||||||||||||| |||||| ||| ||||| ||||| |||||| ||||| |||||||| | || ||||||||||||| ||||||||| | |||||| |
|
|
| T |
34127047 |
aaaatcaaacacttctatccagtttcttacattcttggtgtgctctttatcaaaataaccaattggtgtgatctcatctctggcaaccttcattttctcc |
34127146 |
T |
|
| Q |
154 |
tccagactctgagcaaagaacaatctagaagcttcctcaagtctctgccttagactcaaagggac |
218 |
Q |
| |
|
|||| ||| ||||||||||||||||||| |||||| |||||||| ||||| | |||||||||||| |
|
|
| T |
34127147 |
tccaaactttgagcaaagaacaatctagcagcttcatcaagtctttgcctaatactcaaagggac |
34127211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 34143326 - 34143438
Alignment:
| Q |
3 |
atcatcatgttcatcagaactacgaggaactaaagtaggatcttgagaaagaaaatcaaacacttctttccagtctctaacatttttggtatgctctgta |
102 |
Q |
| |
|
|||||| |||||||||||| | ||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
34143326 |
atcatcgtgttcatcagaattcagaggaaccaaagtagggtcattagagagaaaatcaaacacttctttccagtctcttacattcttggtgtgctctgta |
34143425 |
T |
|
| Q |
103 |
tcataataaccag |
115 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
34143426 |
tcatgataaccag |
34143438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 12324008 - 12324064
Alignment:
| Q |
54 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |
|
|
| T |
12324008 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12324064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 12375161 - 12375217
Alignment:
| Q |
54 |
aaaatcaaacacttctttccagtctctaacatttttggtatgctctgtatcataata |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || |||||||| || |||||||| |
|
|
| T |
12375161 |
aaaatcaaacacttccttccaatctctaacattcttagtatgctcagtttcataata |
12375217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University