View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_2 (Length: 609)
Name: NF3891_high_2
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 546; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 21560334 - 21559741
Alignment:
| Q |
1 |
ttcgtgattcttattcttgggagaataatttgggttgagtctaactcacctttataaaaccgatatgtatgtcctcagtgacctgacttataaacacact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21560334 |
ttcgtgattcttattcttgggagaataatttgggttgaacctaactcaactttataaaaccgatatgtatgtcctcagtgacctgacttataaacacact |
21560235 |
T |
|
| Q |
101 |
tacatactatatttcatatcgaatgtgagactcttaacacaccttttatgatgagaacttcatatatgaagtgtgattcggatggtccaattgaggtgac |
200 |
Q |
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| T |
21560234 |
tacatgctatatttcatatcgaatgtgagactcttaacacaccttttataatgagaacttcatatatgaagtgtgattcggatggtccaattgaggtgac |
21560135 |
T |
|
| Q |
201 |
ctaatagaaggttaccaaccaataaaaacattttcatgacattgtcgaat-tagatctcttaatagggatgaacaaatgcaatcgacgtgacctttatcg |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
21560134 |
ctaatataaggttaccaaccaataaaaacattttcatgacattgtcgaatgtggatctcttaatagtgatgaacaaatgcaatcaacgtgacctttatcg |
21560035 |
T |
|
| Q |
300 |
ttgttgcataaaccttgatgattctaataaacaatgactcatcataatagaaactatttagatccttctagaaggaggtctgactcatcatcttagggag |
399 |
Q |
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| T |
21560034 |
ttgttgcataaaccttgatgattctaataaacaatgactcatcataatagaaactatttagatccttctagaaggaggtctgactcatcatcttagggag |
21559935 |
T |
|
| Q |
400 |
atccatcgggcttagtattaaacatatttggctcataagattctttcaacttttaattgctttgtctagatgtttatttttgtaaaaactataattgtgt |
499 |
Q |
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| T |
21559934 |
atccatcgggcttagtattaaacatatttggctcataagattctttcaacttttaattgctttgtctagatgtttatttttgtaaaaactataattgtgt |
21559835 |
T |
|
| Q |
500 |
aacttgattgtttgatattatttgttcaggcaccaggaacatggaggtggatgttaggtgttgcagcagtaccggcattaacacaaatcgtatt |
593 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21559834 |
aatttgattgtttgatattatttgttcaggcaccaggaacatggaggtggatgttaggtgttgcagcagtaccggcattaacacaaatcgtatt |
21559741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 525 - 568
Target Start/End: Complemental strand, 21493118 - 21493075
Alignment:
| Q |
525 |
tcaggcaccaggaacatggaggtggatgttaggtgttgcagcag |
568 |
Q |
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| T |
21493118 |
tcaggcaccaggcacatggaggtggatgttaggagttgcagcag |
21493075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 572
Target Start/End: Original strand, 33115770 - 33115823
Alignment:
| Q |
519 |
atttgttcaggcaccaggaacatggaggtggatgttaggtgttgcagcagtacc |
572 |
Q |
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||||||| ||||||| |||||||||||||||||| | ||||| |||||| |||| |
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| T |
33115770 |
atttgtttaggcacctggaacatggaggtggatgcttggtgtagcagcattacc |
33115823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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