View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_3 (Length: 553)
Name: NF3891_high_3
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 401 - 532
Target Start/End: Complemental strand, 23835332 - 23835201
Alignment:
| Q |
401 |
cccaactgaggaattgaaagaaaggaaaagaaacaaatcgagttaagaagtcttcgctctattaacgtgtttgtttgggtggtgagcatcctttgaaatt |
500 |
Q |
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| T |
23835332 |
cccagctgaggaattgaaagaaaggaaaagaaacaaatcgagttaagaagtcttcgctcttttaacgtgtttgtttgggtggtgagcatcctttgaaatt |
23835233 |
T |
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| Q |
501 |
gaaagcacgcaattcaattttccaagaccaaa |
532 |
Q |
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| T |
23835232 |
gaaagcacgcaattcaattttccaagaccaaa |
23835201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 44 - 186
Target Start/End: Complemental strand, 23835707 - 23835562
Alignment:
| Q |
44 |
cctagaaatttgttaacaacaatcatcattttcttaatcatctcaataaactctatcattttcttgaaac-acccctcttcccattatttctacaatcaa |
142 |
Q |
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| T |
23835707 |
cctaaaaatttgttaacaacaatcgtcattttcttaatcatctcaataaactctatcattttcttgaaacaacccctcttcccattatttctacaatcaa |
23835608 |
T |
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| Q |
143 |
gtaaaacatagattacatcaaa--actataaatatcaagtttgaag |
186 |
Q |
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| T |
23835607 |
gtaagacatagattacatcaaatctctataaatctcaagtttgaag |
23835562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 23835480 - 23835367
Alignment:
| Q |
253 |
taattctcaaaatctgattaccaattttcagaactttcatctcattcaaccaaaatcattttaatctcactcaacnnnnnnntccttctcaaaactcatt |
352 |
Q |
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| T |
23835480 |
taattctcaaaatctgattaccaattttcagaactttcatctcattcaaccaaaatcattttaatctcactcaacaaaaaaatccttctcaaaactcatt |
23835381 |
T |
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| Q |
353 |
tgattaattgtaga |
366 |
Q |
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| T |
23835380 |
tgattaattgtaga |
23835367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 30164802 - 30164860
Alignment:
| Q |
56 |
ttaacaacaatcatcattttcttaatcatctcaataaactctatcattttcttgaaaca |
114 |
Q |
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| T |
30164802 |
ttaacaacaaccgttattttcttcatcatcttaataaactccatcattttcttcaaaca |
30164860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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