View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_4 (Length: 532)
Name: NF3891_high_4
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Complemental strand, 32958089 - 32957587
Alignment:
| Q |
16 |
actatccacgcataaatatcacgcttctaattctatgtgtgtatatatatacttccaaaaataataagagggaaaataatatcgtgaaacttacagtgag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32958089 |
actatccacgcataaatatcacgcttctaattctatgtgt--atatatatacttccaaaaataataagagggaaaataatatcgtgaaacttacagtgag |
32957992 |
T |
|
| Q |
116 |
ggacaaaatgccagtgataatgccagttttcacgactagaccaagatgactaccatgaaatttcaacatgttccatgaagaaggatttattccttcatgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32957991 |
ggacaaaatgccagtgataatgccagttttcacgactagaccaagatgactaccatgaaatttcaacatgttccatgaagaaggatttattccttcatgc |
32957892 |
T |
|
| Q |
216 |
aattttccaatctagcaacaacatcagaagacaaaagtaatgattaatctcatggatatatgtacttaagaatcaaaactattagacttgtgtgatgatg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32957891 |
aattttccaatctagcaacaacatcagaagacaaaagtaatgattaatctcatggatatatgtacttaagaatcaaaactattagacttgtgtgatgatg |
32957792 |
T |
|
| Q |
316 |
acttgagaagcaaatggggagagttggagatgagataagtggcttactaaactgatgccatgattttgagccttgattgcaaaacacagaagagtagaaa |
415 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32957791 |
acttgagaagcaaatggcgagagttggagatgatataagtggcttactaaactgatgccatgattttgagccttgattgcaaaacacagaagagtagaaa |
32957692 |
T |
|
| Q |
416 |
tgataacacacataagaggagctccagcagagacccagaatagctttggtttcctcatgctctgcatgcatttatttattttgatgagtttgtcaatact |
515 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32957691 |
tgatcacacacataagaggagctccagcagagacccagaatagctttggtttcctcatgctctgcatgcatttatttatttggatgagtttgtcaatact |
32957592 |
T |
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| Q |
516 |
agtat |
520 |
Q |
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| T |
32957591 |
agtat |
32957587 |
T |
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