View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_5 (Length: 456)
Name: NF3891_high_5
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 202 - 455
Target Start/End: Complemental strand, 29073167 - 29072912
Alignment:
| Q |
202 |
gaaatcgtggagttcaattgaataatgatgttcaagagatatgtttggaagtatccaaattaatttatttctaatgaaattgattttttatttaacttaa |
301 |
Q |
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| T |
29073167 |
gaaatcgtggagttcaattgaataatgatgttcaagagatatgtttggaagtatccaaattaatttatttctaatgaaattgattttttatttaacttaa |
29073068 |
T |
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| Q |
302 |
tttagtcaggaacgaactttgaatacctagattcatattatttattta--tttgtttataaaaatggagaattaagacaaaagaaaaatatttatcatct |
399 |
Q |
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| T |
29073067 |
tttagtcaggaacgaactttgaatacctagattcatattatttatttatttttttttataaaaatggagaattcagacaaaagaaaaatatttatcatct |
29072968 |
T |
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| Q |
400 |
gcaattacaataaagattgtgttccaagttcaagaatcatagtattatctacccac |
455 |
Q |
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| T |
29072967 |
gcaattacaataaagattgtgttccaagttcaagaatcataataatatctagccac |
29072912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 29073346 - 29073214
Alignment:
| Q |
18 |
aattataatatcaatcaaatcatgtgactcataataaatagttttctttcatgctaattatacattttcttaaaatcgacttcgttttcgnnnnnnnatg |
117 |
Q |
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| T |
29073346 |
aattataatatcaatcaaatcatgtgactcataataaatagttttctttcatgctaattatacattttcttaaaatcgacttcgttttcgtttttttatg |
29073247 |
T |
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| Q |
118 |
ctgttatttacaatgaaaacacaggtactttac |
150 |
Q |
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| T |
29073246 |
ctgttatttacaatgaaaacacaggtactttac |
29073214 |
T |
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