View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_high_9 (Length: 349)
Name: NF3891_high_9
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 31799436 - 31799110
Alignment:
| Q |
11 |
cagagaagggtcggagtgccattgcacatacatatcgttgacatctcttaccatacatcttgttgaaaattgattccacaactagaactcatgaccaga- |
109 |
Q |
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| T |
31799436 |
cagagaagggtcggagtgccattgcacatacatatcgttgacatctcttaccatacatcttgttgaaaattgattccacaactagaactcatgaccagat |
31799337 |
T |
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| Q |
110 |
---agttccaactaacaacatcaatcactgtattaagctcccctacttaaaacaaaatgtaacgaagccactgaaaaaatgcaggttccattttctgcca |
206 |
Q |
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| T |
31799336 |
caaagttacaactaacaacatcaatcactgtattaagctcccctacttaaaacaaaatgtaacgaagccactgaaaaaatgcaggttccattttctgcca |
31799237 |
T |
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| Q |
207 |
cttccttctccatttgatgtatgttaacaaagctcttctattacgaactatttgaggtaatagctaatgatgcggtggtcagaggtgagagtgggagtag |
306 |
Q |
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| T |
31799236 |
cttccttctccatttgatgtatgttaacaaagctcttctattacgaactatttgaggtaatagctaatgatgcggtggtcggaggggagagtgggagtag |
31799137 |
T |
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| Q |
307 |
gaagaaacggtggtgcggcgcagaaac |
333 |
Q |
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| T |
31799136 |
gaagaaacggtggtgcgacgcagaaac |
31799110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 31790864 - 31790708
Alignment:
| Q |
79 |
attgattccacaactagaactcatgaccagaagttccaactaacaacatcaatcactgtattaagctcccctacttaaaacaaaatgtaacgaagccact |
178 |
Q |
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| T |
31790864 |
attgattccagaactggaacccgtgacctttagttacaactaacaacatcaatcacagtatcaagct-ccctacgtaaaacaaaatatcacgaggcca-t |
31790767 |
T |
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| Q |
179 |
gaaaaaatgcaggttccattttctgccacttccttctccatttgatgtatgttaacaaag |
238 |
Q |
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| T |
31790766 |
g-aaaaccgcagggtcctttttctgcatctttcttttctatatgatatatgttaacaaag |
31790708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 323
Target Start/End: Original strand, 1742707 - 1742779
Alignment:
| Q |
251 |
gaactatttgaggtaatagctaatgatgcggtggtcagaggtgagagtgggagtaggaagaaacggtggtgcg |
323 |
Q |
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| T |
1742707 |
gaactgtttgaggtaatcgatgatgatgcggtggtcggaggggagagtgggagtaggaagaagcggaggtgcg |
1742779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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