View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_10 (Length: 347)
Name: NF3891_low_10
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 332
Target Start/End: Complemental strand, 41258338 - 41258018
Alignment:
| Q |
11 |
cagagaggtgcagtgaaatatatacagccactacttttaaagtacatcaaaccatttactttttgacatatataattaatcacagtaaaaaattgcacta |
110 |
Q |
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| T |
41258338 |
cagagaggtgcagtgaaatatatacagccactacttttaaagtacatcaaaccatttactttttgacatatataattaatcacagtaaaaaactgcacta |
41258239 |
T |
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| Q |
111 |
ggtattactagcataaaagaaaaatcattgttactatacttgattttattgtgatgggatatttttgttcctattgaagagtaaaatgaaaggaaaagac |
210 |
Q |
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| T |
41258238 |
ggtattactagcataaa-gaaaaatcattgttactatacttgattttattgtgatggaatatttttgttcctattgaagagtaaaatgaaaggaaaagac |
41258140 |
T |
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| Q |
211 |
tacacatgcataataatattccaagaataaacgtaccttgatagtgaaggagttcaacatggtatcatcagaagtactattaatgttaacatggagaatt |
310 |
Q |
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| T |
41258139 |
tacacatgcataataatattccaagaataaacgtaccttgatagtgaaggagttcaacatggtatcatcagaagtactattaatgttaacatggagaatt |
41258040 |
T |
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| Q |
311 |
tcaagtgcaagatcttcaagtg |
332 |
Q |
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| T |
41258039 |
tcaagtgcaagatcttcaagtg |
41258018 |
T |
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