View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_12 (Length: 296)
Name: NF3891_low_12
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 41571604 - 41571312
Alignment:
| Q |
1 |
aatgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571604 |
aatgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacat |
41571505 |
T |
|
| Q |
101 |
caacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41571504 |
caacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacaaaaaaa |
41571405 |
T |
|
| Q |
201 |
ggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcacccctttgcttctcc |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
41571404 |
ggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccccttggattctcc |
41571312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 41590552 - 41590270
Alignment:
| Q |
1 |
aatgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacat |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
41590552 |
aatgccaatgcatatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatcattcccccaaaaaactacctcaaacat |
41590453 |
T |
|
| Q |
101 |
caacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnn |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||| |||| |||||||||||| |||||||||||||| |
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| T |
41590452 |
caacctaaaaggatcctcacgttcaacattgttgtaatcaagcatatcaaacaatgctgaataataaaaaacagcttccttaaaccttgtcacaaaaaaa |
41590353 |
T |
|
| Q |
201 |
ggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcacccct |
283 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41590352 |
ggtgcatcataaccaccattaacaatgctatgaataaatatattcggatttgccttcttaatcaaatccaaaacagcacccct |
41590270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 41584021 - 41583741
Alignment:
| Q |
1 |
aatgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacat |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41584021 |
aatgccaatgcctgtatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaacacttcctcaaacat |
41583922 |
T |
|
| Q |
101 |
caacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnn |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
41583921 |
caacctaataggatcctcacgttcaacattgttgtgatcaagcgtatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaa |
41583822 |
T |
|
| Q |
201 |
ggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccc |
281 |
Q |
| |
|
||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |
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| T |
41583821 |
ggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacatcaccc |
41583741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 41557892 - 41557612
Alignment:
| Q |
1 |
aatgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacat |
100 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |
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|
| T |
41557892 |
aatgccaatgcctgtatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatctttcccccaaacgtctccctcaaacat |
41557793 |
T |
|
| Q |
101 |
caacctattaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgatgagtaatgaaaaacagcttctttaaaccttgtcacnnnnnnn |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| |
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| T |
41557792 |
caacctaacaggatcctcacgttcaacattgttgttatcaagcatatcaaacaatgctgaataatgaaaaacagcttccttaaaccttgtcacaaaaaaa |
41557693 |
T |
|
| Q |
201 |
ggtgcatcataacaaccattaacaatgctttgaacaaatatattcggatttgccttcttaatcaaatccaaaacagcaccc |
281 |
Q |
| |
|
||| |||| |||| ||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
41557692 |
ggttcatcgtaaccaccattaacaatgctatgaataaatatattcggatttgtctttctaatcaaatccaaaacagcaccc |
41557612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 41598622 - 41598570
Alignment:
| Q |
15 |
tatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
67 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||||||||| |||| ||||||||| |
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| T |
41598622 |
tatgtctcgggcctctcaaccctctcaaaaccttcacatgctacaacattcat |
41598570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 23916089 - 23916192
Alignment:
| Q |
3 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcattatatccttcccccaaaactcttcctcaaacatca |
102 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| | | |||||||||| ||||||| |||||||| ||| ||||||| ||||||| ||||||||||| |
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|
| T |
23916089 |
tgccatttcctgtatgtctctggcctctcaaccctctgagaaccttcacaggctataatattcattacttccctcccccagaactctttctcaaacatca |
23916188 |
T |
|
| Q |
103 |
acct |
106 |
Q |
| |
|
|||| |
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|
| T |
23916189 |
acct |
23916192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 23911557 - 23911611
Alignment:
| Q |
13 |
tatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
67 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||| ||| ||||| |
|
|
| T |
23911557 |
tatatgtctctggcctctcaactctctctaaaccttcacaagctacaacgttcat |
23911611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 23905422 - 23905358
Alignment:
| Q |
3 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
67 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || || |||||||||| |||| ||||||||| |
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|
| T |
23905422 |
tgccattgtttatatgtctctggcctttcaactctttctaaaccttcacatgctacaacattcat |
23905358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 23921562 - 23921626
Alignment:
| Q |
3 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattcat |
67 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| || || |||||||||| |||| ||||||||| |
|
|
| T |
23921562 |
tgccattgtttatatgtctctggcctttcaactctttctaaaccttcacatgctacaacattcat |
23921626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 22546386 - 22546323
Alignment:
| Q |
3 |
tgccattgcctatatgtctctggcctctcaaccctatcacaaccttcacaagctataacattca |
66 |
Q |
| |
|
||||| |||| |||||||||||||||||| || || |||||||||||||| ||||||||||||| |
|
|
| T |
22546386 |
tgccactgccgatatgtctctggcctctctactctctcacaaccttcacaggctataacattca |
22546323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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