View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3891_low_13 (Length: 281)

Name: NF3891_low_13
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3891_low_13
NF3891_low_13
[»] chr7 (2 HSPs)
chr7 (39-277)||(23835714-23835953)
chr7 (16-84)||(18405243-18405311)
[»] chr5 (3 HSPs)
chr5 (84-253)||(17440408-17440578)
chr5 (83-176)||(17441754-17441848)
chr5 (31-84)||(20939197-20939250)
[»] chr4 (4 HSPs)
chr4 (16-84)||(18161317-18161385)
chr4 (16-84)||(15459652-15459720)
chr4 (16-84)||(15820295-15820363)
chr4 (16-84)||(18113122-18113190)
[»] scaffold0264 (1 HSPs)
scaffold0264 (16-84)||(5754-5822)
[»] scaffold0001 (1 HSPs)
scaffold0001 (16-84)||(132303-132371)
[»] chr8 (2 HSPs)
chr8 (16-84)||(27009596-27009664)
chr8 (16-84)||(21912718-21912786)
[»] chr1 (1 HSPs)
chr1 (16-84)||(28136802-28136870)
[»] chr6 (1 HSPs)
chr6 (16-84)||(27520564-27520632)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 39 - 277
Target Start/End: Complemental strand, 23835953 - 23835714
Alignment:
Q  39 tactagtcctgaatctgagaagtggcttgaatccatgaaatctgaacaagatgaatgatgtggcatatgaaccaaattgaaagtaaacaaaatgggaaa- 137  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||| | ||   ||||||||||||||||| || |||| |||     
T  23835953 tactagtcctgaatctgagaagtggcttgaagtcatgaaatctgaacaaaatgaatgatgtgtcgtagagaccaaattgaaagtaaataatatggaaaag 23835854  T
Q  138 caaccattttagtccctgtatgtgcagctcaatgtcataatgattcatgacttaggatcgtgtgatgtggtattatggactaaattgaaataagatgatc 237  Q
    |||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23835853 caaccagtttggtccctgtatgtgcagctcgatgtcataatggttcatgacttaggatcgtgtgatgtggtattatggactaaattgaaataagatgatc 23835754  T
Q  238 tccaacgtcttcatcatcttcaacaatatgaccttcatga 277  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23835753 tccaacgtcttcatcatcttcaacaatatgaccttcatga 23835714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 18405243 - 18405311
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || |||| |||||||||||||||| ||||||||||||||    
T  18405243 cctgtgacttacacggaggccataactggccccgaatatgagaagtggcttgaagccatgaaatctgaa 18405311  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 253
Target Start/End: Original strand, 17440408 - 17440578
Alignment:
Q  84 acaagatgaatgatgtggcatatgaaccaaattgaaagtaaacaaaatg-ggaaacaaccattttagtccctgtatgtgcagctcaatgtcataatgatt 182  Q
    ||||||| || ||||||||||| | ||| ||||||||||||  || |||   |||||||||||||||||| || |||||||  ||| ||||||| || |     
T  17440408 acaagataaacgatgtggcatagggacctaattgaaagtaacaaacatgaaaaaacaaccattttagtccttgaatgtgcatatcactgtcatattggtc 17440507  T
Q  183 catgacttaggatcgtgtgatgtggtattatggactaaattgaaataagatgatctccaacgtcttcatca 253  Q
    | ||||| | ||| ||| || |||   |||||||| ||||| |||||||||||||| |||| |||||||||    
T  17440508 cttgactcaagatggtgggacgtgacgttatggacgaaattaaaataagatgatcttcaacatcttcatca 17440578  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 17441848 - 17441754
Alignment:
Q  83 aacaagatgaatgatgtggcatatgaaccaaattgaaagtaaacaaaatggg-aaacaaccattttagtccctgtatgtgcagctcaatgtcata 176  Q
    ||||| ||||||| ||||||||| | |||||||||||||||| ||||||||| |||||| |||||| || |||| |||| ||| ||| |||||||    
T  17441848 aacaaaatgaatgttgtggcatagggaccaaattgaaagtaaccaaaatgggaaaacaagcattttggttcctgaatgtacagatcactgtcata 17441754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 20939197 - 20939250
Alignment:
Q  31 gaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    |||| ||||||| | || |||||||||||||||||||||  |||||||||||||    
T  20939197 gaggccattactggccccgaatctgagaagtggcttgaagacatgaaatctgaa 20939250  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 18161317 - 18161385
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||||||| | || ||||||||||||||||||||| ||||||||||||||    
T  18161317 cctgtgacttacacggaggccattactggccccgaatctgagaagtggcttgaagccatgaaatctgaa 18161385  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15459652 - 15459720
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || ||||||||||||||||||||| ||||||||||||||    
T  15459652 cctgtgacttacacggaggccataactggccccgaatctgagaagtggcttgaagccatgaaatctgaa 15459720  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15820295 - 15820363
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || ||||||||||||||||||||| ||||||||||||||    
T  15820295 cctgtgacttacacggaggccataactggccccgaatctgagaagtggcttgaagccatgaaatctgaa 15820363  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 18113190 - 18113122
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || |||| |||||||||||||||| ||||||||||||||    
T  18113190 cctgtgacttacacggaggccataactggccccgaatttgagaagtggcttgaagccatgaaatctgaa 18113122  T

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Target: scaffold0264 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 5822 - 5754
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || ||||||||||||||||||||| ||||||||||||||    
T  5822 cctgtgacttacacggaggccataactggccccgaatctgagaagtggcttgaagccatgaaatctgaa 5754  T

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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 132371 - 132303
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||||||| | || |||||| |||||||||||||| ||||||||||||||    
T  132371 cctgtgacttacacggaggccattactggccccgaatcttagaagtggcttgaagccatgaaatctgaa 132303  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 27009664 - 27009596
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || ||||||||||||||||||||| ||||||||||||||    
T  27009664 cctgtgacttacacggaggccataactggccccgaatctgagaagtggcttgaagccatgaaatctgaa 27009596  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 21912718 - 21912786
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || |||||| |||||||||||||| ||||||||||||||    
T  21912718 cctgtgacttacacggaggccataactggccccgaatctaagaagtggcttgaagccatgaaatctgaa 21912786  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 28136870 - 28136802
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||||||| | |  ||||||||||||||||||||| ||||||||||||||    
T  28136870 cctgtgacttacacggaggccattactggcctcgaatctgagaagtggcttgaagccatgaaatctgaa 28136802  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 27520632 - 27520564
Alignment:
Q  16 cctgtgacttaccaagaggtcattactagtcctgaatctgagaagtggcttgaatccatgaaatctgaa 84  Q
    ||||||||||||   |||| ||| ||| | || |||| |||||||||||||||| ||||||||||||||    
T  27520632 cctgtgacttacacggaggccataactggccccgaatttgagaagtggcttgaagccatgaaatctgaa 27520564  T

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