View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_14 (Length: 261)
Name: NF3891_low_14
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 41571594 - 41571837
Alignment:
| Q |
1 |
gcaatggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcatgttatagataaattgaagtgtaagttgagagatgatgcatat |
100 |
Q |
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| T |
41571594 |
gcaatggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcagattatagataaattgaagtgtaagttgagagatgatgcatat |
41571693 |
T |
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| Q |
101 |
aatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagct |
200 |
Q |
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| T |
41571694 |
aatagtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagct |
41571793 |
T |
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| Q |
201 |
tcacaacatgttgggagtaaactaacatttttgttcttgaaaat |
244 |
Q |
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| T |
41571794 |
tcacaacatgttgggagtaaactaacatttttgttcttgaaaat |
41571837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 41590546 - 41590780
Alignment:
| Q |
5 |
tggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcatgttatagataaattgaagtgtaagttgagagatgatgcatataata |
104 |
Q |
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| T |
41590546 |
tggcattctaggcacatgggaaatgggtttaggtctttgaaattggataagcagattataaataaattgaagtgtaagttgagagatgatgcatataata |
41590645 |
T |
|
| Q |
105 |
gtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcac |
204 |
Q |
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| T |
41590646 |
gtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccaacatagaccttcac |
41590745 |
T |
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| Q |
205 |
aacatgttgggagtaaactaacatttttgttcttg |
239 |
Q |
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| T |
41590746 |
aactaggtgggagtaaattaacatttctgtgcttg |
41590780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 41557886 - 41558125
Alignment:
| Q |
5 |
tggcattttaggcacatgggaaatgggtttaagtctttgaaattggataagcatgttatagataaattgaagtgtaagttgagagatgatgcatataata |
104 |
Q |
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||||||| ||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
41557886 |
tggcattctaggcacataggaaatgggtttaggtctttgaaattgaataagcagattatagataaattgaagggtaggttgagaaatgatgcatataata |
41557985 |
T |
|
| Q |
105 |
gtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttcac |
204 |
Q |
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| T |
41557986 |
gtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggttccagcatagaccttcac |
41558085 |
T |
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| Q |
205 |
aacatgttgggagtaaactaacatttttgttcttgaaaat |
244 |
Q |
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| T |
41558086 |
aatatgttgggagtaaatcaacatttttgttcttgaaaat |
41558125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 41584015 - 41584255
Alignment:
| Q |
5 |
tggcattttaggcacatgggaaatgggtttaagtcttt-gaaattggataagcatgttatagataaattgaagtgtaagttgagagatgatgcatataat |
103 |
Q |
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||||||| ||||||||| | ||||||||||| |||||| ||||||| ||||||| ||||||||||||||||| ||| ||||||| |||||||||||||| |
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| T |
41584015 |
tggcattctaggcacatagtaaatgggtttaggtcttttgaaattgaataagcagattatagataaattgaagggtaggttgagaaatgatgcatataat |
41584114 |
T |
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| Q |
104 |
agtgattttctgtttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcttgttggattccagcatagagcttca |
203 |
Q |
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| T |
41584115 |
agtgattttttatttgaggtgaatgaaaattggatgctacaaggttggaagggtagaattctatttggttcttcatgttgggttccagcatagaccttca |
41584214 |
T |
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| Q |
204 |
caacatgttgggagtaaactaacatttttgttcttgaaaat |
244 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41584215 |
caacatgttgggagtaaattaacattttcgttcttgaaaat |
41584255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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