View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_17 (Length: 233)
Name: NF3891_low_17
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 34137559 - 34137378
Alignment:
| Q |
1 |
acagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137559 |
acagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaa |
34137460 |
T |
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| Q |
101 |
cttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttagg |
182 |
Q |
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| T |
34137459 |
cttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttagg |
34137378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34133648 - 34133471
Alignment:
| Q |
1 |
acagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaa |
100 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||| |
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| T |
34133648 |
acagaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaa |
34133549 |
T |
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| Q |
101 |
cttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtct |
178 |
Q |
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||| |||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
34133548 |
cttggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtct |
34133471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 34141222 - 34141045
Alignment:
| Q |
1 |
acagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaa |
100 |
Q |
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|||||||||||||||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34141222 |
acagaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaag |
34141123 |
T |
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| Q |
101 |
cttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtct |
178 |
Q |
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|||||| ||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||| |
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| T |
34141122 |
cttagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtct |
34141045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 34127375 - 34127194
Alignment:
| Q |
1 |
acagaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaa |
100 |
Q |
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|
||||||||||||| || |||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | |
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| T |
34127375 |
acagaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatag |
34127276 |
T |
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| Q |
101 |
cttagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttagg |
182 |
Q |
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||| |||||| | ||||||||||||||||| || ||||| ||||| ||||| |||||||||| ||||||| |||| ||||| |
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| T |
34127275 |
cttggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattagg |
34127194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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