View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_19 (Length: 222)
Name: NF3891_low_19
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_19 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 2062 - 2001
Alignment:
| Q |
143 |
aataaaagacataacacaagaatcagaagaattaattttggtagtatcaatggtggtgccat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2062 |
aataaaagacataacacaagaatcagaagaattaattttggtagtatcaatggtggtgccat |
2001 |
T |
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Target: scaffold0147; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 2187 - 2125
Alignment:
| Q |
18 |
catggttgttgttgatggcagataaagaaactgtgaaacttgaaaaagaatgtattggaacaa |
80 |
Q |
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| T |
2187 |
catggctgttgttgatggcagataaagaaactgggaaacttgaaaaagaatgtattggaacaa |
2125 |
T |
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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 3451281 - 3451220
Alignment:
| Q |
143 |
aataaaagacataacacaagaatcagaagaattaattttggtagtatcaatggtggtgccat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451281 |
aataaaagacataacacaagaatcagaagaattaattttggtagtatcaatggtggtgccat |
3451220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 3451406 - 3451344
Alignment:
| Q |
18 |
catggttgttgttgatggcagataaagaaactgtgaaacttgaaaaagaatgtattggaacaa |
80 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3451406 |
catggctgttgttgatggcagataaagaaactgggaaacttgaaaaagaatgtattggaacaa |
3451344 |
T |
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