View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3891_low_6 (Length: 415)

Name: NF3891_low_6
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3891_low_6
NF3891_low_6
[»] chr2 (4 HSPs)
chr2 (16-403)||(28735086-28735473)
chr2 (54-400)||(28700124-28700469)
chr2 (196-395)||(28742348-28742547)
chr2 (201-402)||(28783337-28783541)
[»] chr8 (9 HSPs)
chr8 (203-395)||(1948482-1948674)
chr8 (203-395)||(2037604-2037796)
chr8 (203-395)||(2029481-2029673)
chr8 (203-398)||(10768502-10768697)
chr8 (203-397)||(2058003-2058197)
chr8 (203-395)||(2034040-2034232)
chr8 (203-395)||(2050772-2050964)
chr8 (203-395)||(2055181-2055373)
chr8 (203-328)||(2046910-2047035)
[»] chr1 (2 HSPs)
chr1 (219-395)||(16439170-16439346)
chr1 (207-320)||(16418965-16419078)


Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 28735086 - 28735473
Alignment:
Q  16 gttataagctgtagttcattcaaatttataattagataaattcgtgttaaggttatttccgcatataagaaaaaagtactttcttagccgcacaatgaaa 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28735086 gttataagctgtagttcattaaaatttataattagataaattcgtgttaaggttatttccacatataagaaaaaagtactttcttagccgcacaatgaaa 28735185  T
Q  116 cgattcatttctnnnnnnnntctagcacaaaattattaacagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgcag 215  Q
    ||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28735186 cgattcatttctaaaaaaaatctaccacaaaattattaacagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgcag 28735285  T
Q  216 aagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatggtcttggaga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28735286 aagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaatatggtcttggaga 28735385  T
Q  316 agcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaagta 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28735386 agcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaagta 28735473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 54 - 400
Target Start/End: Original strand, 28700124 - 28700469
Alignment:
Q  54 aattcgtgttaaggttatttccgcatataagaaaaaagtactttcttagccgcacaatgaaacgattcatttctnnnnnnnntctagcacaaaattatta 153  Q
    ||||| |||||||||||||| | ||||    |||||||| ||| ||||| |||||||||||||||||||||| |        |||| || ||||||||||    
T  28700124 aattcatgttaaggttatttacacata----aaaaaagttcttgcttagtcgcacaatgaaacgattcatttgtaaaaaaaatctatcaaaaaattatta 28700219  T
Q  154 acagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccg 253  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  28700220 acaattttaattttcaatgcaatattacaagcctaatagtaaaatagagaacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccg 28700319  T
Q  254 gtggtacatcgatccacttttcttggtgaagaacttgaagaccacc---aatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggt 350  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28700320 gtggtacatcgatccacttgtcttggtgaagaacttgaaggccaccaataatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggt 28700419  T
Q  351 ggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28700420 ggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaa 28700469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 196 - 395
Target Start/End: Original strand, 28742348 - 28742547
Alignment:
Q  196 aatagagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagac 295  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||  ||||||||||| ||||||||| | | ||||||||||||||| |    
T  28742348 aatagagaacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaatccactttcccttgtgaagaacttgaaggc 28742447  T
Q  296 caccaatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  28742448 caccaatatggtcttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaatgtggttcaggacaagcaggatagtaatg 28742547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 402
Target Start/End: Original strand, 28783337 - 28783541
Alignment:
Q  201 agaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccacca 300  Q
    |||||||||||| ||||||||||||| ||||||||||||||| || ||||  || |||| ||| |||||||| |  ||||||| |||||| || ||||||    
T  28783337 agaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaatccacttgttctggtgaaaaacttggaggccacca 28783436  T
Q  301 atatggtc---ttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgac 397  Q
    ||||| ||   ||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28783437 atatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgac 28783536  T
Q  398 caagt 402  Q
     ||||    
T  28783537 taagt 28783541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 203 - 395
Target Start/End: Original strand, 1948482 - 1948674
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||| |||||||||||||||||| |  |||||  | | | | |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  1948482 aacttgcctgcaaaagatcaccaatattaactatgagagctccagttgcaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 1948581  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    ||||||||| |||||||||||||||||||||   || ||||| || || |||||||| || |  |||||||||||||||| |||||| |||||    
T  1948582 atggtcttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatg 1948674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 2037796 - 2037604
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    ||||||||||||||||||||||||||||||| |  |||||  | | ||| |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  2037796 aacttgcctgcagaagatcaccaatattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 2037697  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    ||||||||||| ||||||||||||||||| |   || ||||| ||||  |||||||  || || |||||||| ||||||| |||||| |||||    
T  2037696 atggtcttggataagcactgtgagaaaaccatggtctgaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataatg 2037604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 2029673 - 2029481
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||| ||||||||||| |||||| || |||||  | ||||| |||| || ||| ||||| || ||||  | ||||||||| || ||||||||    
T  2029673 aacttgcctgcaaaagatcaccaacattaactacgagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat 2029574  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    |||||||||||||||||||||||| |||  |   ||| |||| || || |||||||  || || |||||||||||||||| |||||| |||||    
T  2029573 atggtcttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatg 2029481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 203 - 398
Target Start/End: Complemental strand, 10768697 - 10768502
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||| |||||| |||| |||||| |  |||||| | || || ||||  | ||| ||||| || || || | ||||||||| || ||||||||    
T  10768697 aacttgcctgcaaaagatctccaacattaactatgagagccccaggaacaggtgtaatatcaatccatttatcctgataaagaacttggaggccaccaat 10768598  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgacc 398  Q
    |||||||||||||||||| ||||| |||  |  ||||||||| ||||| |||||||  || || |||||||||||||||| |||||| ||||||||    
T  10768597 atggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatgacc 10768502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 203 - 397
Target Start/End: Complemental strand, 2058197 - 2058003
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||| ||||||||||||| |||||| |  |||||  | ||||| |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  2058197 aacttgcctgaagaagatcaccaacattaactaggagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 2058098  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgac 397  Q
    ||||||||| ||||||| ||| || |||  |  ||||||||| ||||| |||||||  || || |||||||| ||| ||| |||||| |||||||    
T  2058097 atggtcttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgac 2058003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 2034232 - 2034040
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||||||||||||| | || |||||  |||||  | ||||| |||| || ||| ||||| || || |  |  |||||||||||||||||||     
T  2034232 aacttgcctgcagaagatcaccgacatcaacaatgagagctccaggtacaggtgttatatcaatccatttgtcgtcatacagaacttgaagaccaccaac 2034133  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| ||| ||||||||    
T  2034132 atggtcttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatg 2034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 2050964 - 2050772
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||| ||||||||||| |||||| |  |||||  | | ||| |||| || ||| ||||| || ||||  | ||||||||| || ||||||||    
T  2050964 aacttgcctgcaaaagatcaccaacattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat 2050865  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| |||||| |||||    
T  2050864 atggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatg 2050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 395
Target Start/End: Complemental strand, 2055373 - 2055181
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    |||||||||||| ||||||||||| |||||| |  |||||  | | ||| |||| || ||| ||||| || || |  | ||||||||| || ||||||||    
T  2055373 aacttgcctgcaaaagatcaccaacattaactattagagctccagatacaggtgttatatcaatccatttatcgtcataaagaacttggaggccaccaat 2055274  T
Q  303 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| ||| ||||||||    
T  2055273 atggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatg 2055181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 328
Target Start/End: Complemental strand, 2047035 - 2046910
Alignment:
Q  203 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 302  Q
    ||||| |||||||||||||||||| |||||| |  ||||   | ||||| |||| || ||| ||||| || ||||  | ||||||||| |||||||| ||    
T  2047035 aacttacctgcagaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctat 2046936  T
Q  303 atggtcttggagaagcactgtgagaa 328  Q
    ||||||||| ||||||||||| ||||    
T  2046935 atggtcttgtagaagcactgtcagaa 2046910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 395
Target Start/End: Complemental strand, 16439346 - 16439170
Alignment:
Q  219 atcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatggtcttggagaagc 318  Q
    |||||| ||||||||||||||||||||  |||  || |||||||| |||||| | ||||  ||||||||||| ||||||||  |||| ||||| ||||||    
T  16439346 atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacctgtatgatcttgtagaagc 16439247  T
Q  319 actgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 395  Q
    || ||||  |||  | |||| | ||||||  |||||||||  ||||| || |||||||| || ||  ||||||||||    
T  16439246 accgtgatgaaatcaacatctgcatgttttatggttcccaaagttaactcgggttcagggcaggccagatagtaatg 16439170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 320
Target Start/End: Original strand, 16418965 - 16419078
Alignment:
Q  207 tgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatgg 306  Q
    |||||||||||| |||||||| |||||||  |||||| ||| ||  || |||||||| |||||| | || |  |||||||| || || ||||| |||||     
T  16418965 tgcctgcagaaggtcaccaatgttaacaattagagccgcggatagaggaggtacatcaatccacatgtccttatgaagaacctggaggccacctatatga 16419064  T
Q  307 tcttggagaagcac 320  Q
    ||||| ||||||||    
T  16419065 tcttgtagaagcac 16419078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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