View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_7 (Length: 373)
Name: NF3891_low_7
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_7 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 72 - 355
Target Start/End: Original strand, 31966203 - 31966486
Alignment:
| Q |
72 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
171 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966203 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
31966302 |
T |
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| Q |
172 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtcaac |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31966303 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattggatcaac |
31966402 |
T |
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| Q |
272 |
tatatggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattcattttactactatgcatact |
355 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966403 |
tatacggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattcattttactactatgcatact |
31966486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 137 - 353
Target Start/End: Original strand, 31959281 - 31959494
Alignment:
| Q |
137 |
aatttatgttttatcttctttgatttattatttctaatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacag |
236 |
Q |
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||||||||||||||||| |||||| | |||| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959281 |
aatttatgttttatctt---tgatttttcatttttaatctcactgtttgtattttcttaatgtatgacagatatgcaatagctactgggaaatcatacag |
31959377 |
T |
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| Q |
237 |
ctatatacttcaatttgccgtttcattgggtcaactatatggaactgctgcatattatataacaacgattttggaaggcgataatttttctacaaattca |
336 |
Q |
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||| || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31959378 |
ctacatccttcaatttgccgtttcattgggtcagctatatggaactgcaacatattatataacagcgattttggaaggcgataatttttctacaaattca |
31959477 |
T |
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| Q |
337 |
ttttactactatgcata |
353 |
Q |
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||||||||||||||||| |
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| T |
31959478 |
ttttactactatgcata |
31959494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 20981811 - 20981688
Alignment:
| Q |
147 |
ttatcttctttgatttattatttctaatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatact |
245 |
Q |
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||||||||||||| |||| |||| |||| ||| ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| || || ||||| |
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| T |
20981811 |
ttatcttctttgaattatcatttttaatctcacagtttgtgttttctaatatggatgacaaatatgcaatagctactaggaaatcatagagttacatact |
20981712 |
T |
|
| Q |
246 |
tcaatttgccgtttcattgggtca |
269 |
Q |
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|||| ||||| |||| |||||||| |
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| T |
20981711 |
tcaacttgccatttctttgggtca |
20981688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 20971348 - 20971281
Alignment:
| Q |
200 |
atgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
267 |
Q |
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|||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| |
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| T |
20971348 |
atgacaaatatgcaatagctactaggaaatcatacatatacatacttcaatttgccgtttctttgggt |
20971281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 20973566 - 20973509
Alignment:
| Q |
212 |
caatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtca |
269 |
Q |
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| T |
20973566 |
caatagctactaggaaatcatacagctacatacttcaatttgttgtttctttgggtca |
20973509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 30371 - 30457
Alignment:
| Q |
182 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
267 |
Q |
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||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30371 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
30457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 41403964 - 41403878
Alignment:
| Q |
182 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
267 |
Q |
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||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41403964 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
41403878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 7215 - 7135
Alignment:
| Q |
188 |
ttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
267 |
Q |
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|||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
7215 |
ttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
7135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 255
Target Start/End: Original strand, 13445768 - 13445892
Alignment:
| Q |
137 |
aatttatgttttatcttctttgatttattatttc-----taatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatc |
230 |
Q |
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|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||| || || || |||||||||| ||| |||| | |||||| |
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| T |
13445768 |
aatttatgttttatctacttttatttattctttcatttttaatctcattgtttgtgttttcaaatataaataacagatatgcgataactaccgtgaaatc |
13445867 |
T |
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| Q |
231 |
atacagctatatacttcaatttgcc |
255 |
Q |
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||||||||| ||||||||||||||| |
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| T |
13445868 |
atacagctacatacttcaatttgcc |
13445892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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