View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3891_low_8 (Length: 367)
Name: NF3891_low_8
Description: NF3891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3891_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 32650065 - 32650407
Alignment:
| Q |
20 |
aaaccaaaatgcaggaaaataacttgtaagcttttgaaagcttctatccatatacactgcaatttggaacatgtggatcgtccctatttcatttggaacc |
119 |
Q |
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| T |
32650065 |
aaaccaaaatgcaggaaaataacatgtaagcttttgaaagcttctatccatatagactgcaatttggaacatgtagatcgtccctatttcatttggaacc |
32650164 |
T |
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| Q |
120 |
tgctattactttaaaagttaatggggagtgtgtttttgtcatagattttgcatttctatgtgctgaactgcatatatgaccnnnnnnnnaaggttgtctt |
219 |
Q |
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| T |
32650165 |
tgctattacttt-aaagttaatggggagtgtgtttttgtcatatattttgcatttctatgtgttgaactgcatatatgacc-tttttttaaggttgtctt |
32650262 |
T |
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| Q |
220 |
atgagttgcagacaatttactctgttatgtagttagaatggttatgaattt-------act--ctgt----tatcacagttcaaaataaatgatatgaaa |
306 |
Q |
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| T |
32650263 |
atgagttgcagacaatttactctgttatgtagttagaatggttatgaattttttatgaactggctatgaaatatcacagttcaaaataaatgatatgaaa |
32650362 |
T |
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| Q |
307 |
tgtaaagttgccatgtaatccacttacattttaaatcctagatat |
351 |
Q |
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| T |
32650363 |
tgtaaagttgccatgtaatccacttacattttaaatcctagatat |
32650407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 2388386 - 2388423
Alignment:
| Q |
28 |
atgcaggaaaataacttgtaagcttttgaaagcttcta |
65 |
Q |
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| T |
2388386 |
atgcaggaaaataacttgtaagctttccaaagcttcta |
2388423 |
T |
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