View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-11 (Length: 248)
Name: NF3892-Insertion-11
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 1158715 - 1158937
Alignment:
| Q |
8 |
cttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtaccttgtagagtacatcggaccgctgattaaaaacacgaatgttaattg |
107 |
Q |
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| T |
1158715 |
cttctgattttctttgaataacaaatccttgttttgtaccacatatgaggtacctt-------agcttg------tgattaaaaacacgaatgttaattg |
1158801 |
T |
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| Q |
108 |
tatatgttcttcaatcaagagtgaaacctatttgatt-ctgctaatgcctaaaatcttttaacatatcacaattagcttgatcgacaatacgatgacact |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
1158802 |
tatatgttcttcaatcaagagtgaaacctatttgatttctgctaatgcctaaaatcttttaacatgtcacaattagcttgatcgacaacacgatgacact |
1158901 |
T |
|
| Q |
207 |
aaaaggaatgcatgtcgattttcattaatctcatga |
242 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1158902 |
aaaaggaatgcatgtcgattttcattaatctcatga |
1158937 |
T |
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