View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-12 (Length: 242)
Name: NF3892-Insertion-12
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-12 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 7090070 - 7090188
Alignment:
| Q |
124 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
223 |
Q |
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| T |
7090070 |
gtgttgttggtactgatagtgatattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
7090169 |
T |
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| Q |
224 |
catgttgccaattccctct |
242 |
Q |
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| T |
7090170 |
catgttgccaattccctct |
7090188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 7089948 - 7090031
Alignment:
| Q |
8 |
agatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattgactctg |
91 |
Q |
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| T |
7089948 |
agatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattgactctg |
7090031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 7669888 - 7670006
Alignment:
| Q |
124 |
gtgttgttggtactgatagtgaaattggtgaagaacattctggtgctatgtgagattttccatgtctatgcatatgcttagtttctacacctcttctata |
223 |
Q |
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| T |
7669888 |
gtgttgttggtgctgatagtgatattggtgaggaacattctggtgctatgtgagattttccatgtctatgtgtatgtttggtttctacatctcttatata |
7669987 |
T |
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| Q |
224 |
catgttgccaattccctct |
242 |
Q |
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| T |
7669988 |
catgttgccaattccctct |
7670006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 7669774 - 7669857
Alignment:
| Q |
8 |
agatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaaattagcccattgactctg |
91 |
Q |
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| T |
7669774 |
agatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaagttagcccattgactctg |
7669857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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