View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892-Insertion-13 (Length: 653)

Name: NF3892-Insertion-13
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892-Insertion-13
NF3892-Insertion-13
[»] chr8 (2 HSPs)
chr8 (9-597)||(41061939-41062527)
chr8 (614-653)||(41061881-41061921)
[»] chr5 (2 HSPs)
chr5 (12-199)||(37480631-37480826)
chr5 (44-76)||(18280832-18280864)
[»] chr4 (6 HSPs)
chr4 (12-84)||(840853-840925)
chr4 (23-68)||(22778552-22778597)
chr4 (386-474)||(11123427-11123515)
chr4 (9-79)||(7726122-7726192)
chr4 (424-474)||(39753939-39753989)
chr4 (414-474)||(42098913-42098973)
[»] scaffold0244 (1 HSPs)
scaffold0244 (13-194)||(14913-15104)
[»] chr1 (5 HSPs)
chr1 (91-194)||(1260317-1260420)
chr1 (385-469)||(12807030-12807113)
chr1 (414-474)||(26761227-26761287)
chr1 (13-79)||(1260229-1260295)
chr1 (386-474)||(44529222-44529309)
[»] chr2 (2 HSPs)
chr2 (387-421)||(30977848-30977882)
chr2 (13-59)||(40644870-40644916)


Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 9 - 597
Target Start/End: Complemental strand, 41062527 - 41061939
Alignment:
Q  9 gaaccactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaacgaagtgttagtttgttcaagtttcaatc 108  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41062527 gaaccactccaaatgagtttgtcatcaatgtcactatcaatgataatactacaaatacaattttggtaaaacgaagtgttagtttgttcaagtttcaatc 41062428  T
Q  109 ctcattttcaaaccagtcacaaagacgaaggtccgtgtcactgattttaacacatgacacaacattgcaaaggtaaatattttctatctatcataccaaa 208  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  41062427 ctcattttcaaaccagtcacaaagacgaaggtttgtgtcactgatgttaacacatggcacaacattgcaaaggtaaatattttctatctatcataccaga 41062328  T
Q  209 tagagatatgtcttttcctaactctgcatgtaaaatctggcactaatatgtattaaattttctaacaacgttaagtggaaaaatatatacttaaactgta 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41062327 tagatatatgtcttttcctaactctgcatgtaaaatctggcacaaatatgtattaaattttctaacaacgttaagtggaaaaatatatacttaaactgta 41062228  T
Q  309 atatttatacataaaataatacatgtaacaatatttgcattaagaattttgaattcaaacatatctcatgtctttatgaaatgctaacaagtgttcttag 408  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41062227 atatttatacataaaatagtacatgtaacaatatttgcattaagaattttggattcaaacatatctcatgtttttatgaaatgctaacaagtgttcttag 41062128  T
Q  409 gaaacttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaacgtcataaaacaacatattgcacgtaaaagttatc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41062127 gaaacttgataagctgtttaaaatgaaatttttattttagaattaatgtattcaatacattaaaacgtcataaaacaacatattgcacataaaagttatc 41062028  T
Q  509 aatcnnnnnnnnnnnnnaatcgttaaaaagtgtcataaggacacttgttagcaaaacctaataccgccatttttggcgggtctaaatta 597  Q
    ||||             |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  41062027 aatcttttttattttttaatcgttaaaaagtgtcataaggacacttgttagcaaaacctaataccgtaatttttggcggatctaaatta 41061939  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 653
Target Start/End: Complemental strand, 41061921 - 41061881
Alignment:
Q  614 gttttgcaaggaattgaacaaagtacccat-aacaccaccc 653  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  41061921 gttttgcaaggaattgaacaaagtacccataaacaccaccc 41061881  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 37480826 - 37480631
Alignment:
Q  12 ccactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaacgaag--tgt-------tagtttgttcaagtt 102  Q
    ||||||||||||||||| |||||||  | | | ||||||||||||||||||||||||| ||||||||| ||||  |||        |||||||| |||||    
T  37480826 ccactccaaatgagtttatcatcaacattattgtcaatggtaatgctacaaatacaatcttggtaaaatgaaggatgtaagtgtaaagtttgttgaagtt 37480727  T
Q  103 tcaatcctcattttcaaaccagtcacaaagacgaaggtccgtgtcactgattttaacacatgacacaacattgcaaaggtaaatattttctatctat 199  Q
     ||| || ||||||||||| | ||||||||||||||||  |||||||| || | || | |||||||||||||| ||||||| | ||| |||||||||    
T  37480726 ccaaaccacattttcaaacaaatcacaaagacgaaggttagtgtcactaatgtcaatatatgacacaacattg-aaaggtagacattatctatctat 37480631  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 18280864 - 18280832
Alignment:
Q  44 atcaatggtaatgctacaaatacaattttggta 76  Q
    |||||||||||||||||||||||||| ||||||    
T  18280864 atcaatggtaatgctacaaatacaatcttggta 18280832  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 840925 - 840853
Alignment:
Q  12 ccactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaacgaag 84  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| | ||||||||| ||||    
T  840925 ccactccaaatgagtttatcatcaacgtcactatcaatggtaatgctacgaatacagtcttggtaaaaagaag 840853  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 22778552 - 22778597
Alignment:
Q  23 gagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22778552 gagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaa 22778597  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 11123427 - 11123515
Alignment:
Q  386 gaaatgctaacaagtgttcttaggaaacttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaac 474  Q
    ||||||||||||||| || ||| || ||||||||||  ||||||| ||||| ||||||  ||||||| |||||||||| | ||||||||    
T  11123427 gaaatgctaacaagtatttttacgatacttgataagaagtttaaagtgaaaattttatcatagaatttgtgtattcaacatattaaaac 11123515  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 7726122 - 7726192
Alignment:
Q  9 gaaccactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaa 79  Q
    |||||||||||||||||||| |||| | |||||  || ||| || |||||||||||||||| |||| ||||    
T  7726122 gaaccactccaaatgagtttatcattagtgtcatgattaatagtgatgctacaaatacaatcttggcaaaa 7726192  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 39753939 - 39753989
Alignment:
Q  424 gtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaac 474  Q
    ||||||||||||| |||||| |||| ||| |||||||||||||||| ||||    
T  39753939 gtttaaaatgaaagttttatcttaggatttgtgtattcaatacattgaaac 39753989  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 474
Target Start/End: Original strand, 42098913 - 42098973
Alignment:
Q  414 ttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaac 474  Q
    ||||||||  ||||||||||||| ||||||||||| ||| || ||||||||| ||| ||||    
T  42098913 ttgataagaagtttaaaatgaaaattttattttaggatttgtatattcaatatattgaaac 42098973  T

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Target: scaffold0244 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 14913 - 15104
Alignment:
Q  13 cactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaacg---------aagtgt-tagtttgttcaagtt 102  Q
    |||||||||||||||| || ||  |||||  ||||||||||||||||||||| |||||||||||||| |          |||||  |||||||| |||||    
T  14913 cactccaaatgagtttatcctcggtgtcatgatcaatggtaatgctacaaatgcaattttggtaaaaaggtggaagttgagtgtaaagtttgttgaagtt 15012  T
Q  103 tcaatcctcattttcaaaccagtcacaaagacgaaggtccgtgtcactgattttaacacatgacacaacattgcaaaggtaaatattttcta 194  Q
     ||||||  |||||||||| | ||||||||||||||||  |||||||| || | |||| | | ||||||||| ||||| |||| ||| ||||    
T  15013 ccaatccctattttcaaacaaatcacaaagacgaaggtttgtgtcactaatatgaacataaggcacaacattacaaagataaacattatcta 15104  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 91 - 194
Target Start/End: Original strand, 1260317 - 1260420
Alignment:
Q  91 tttgttcaagtttcaatcctcattttcaaaccagtcacaaagacgaaggtccgtgtcactgattttaacacatgacacaacattgcaaaggtaaatattt 190  Q
    |||||| ||||| |||||| ||||||||||| | ||||||||||||||||  |||||||| || | |||| | | ||||||||| ||||| |||| |||     
T  1260317 tttgttgaagttccaatccccattttcaaacaaatcacaaagacgaaggtttgtgtcactaatatgaacataaggcacaacattacaaagataaacatta 1260416  T
Q  191 tcta 194  Q
    ||||    
T  1260417 tcta 1260420  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 385 - 469
Target Start/End: Complemental strand, 12807113 - 12807030
Alignment:
Q  385 tgaaatgctaacaagtgttcttaggaaacttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacatt 469  Q
    ||||| |||||||||||||||||| | ||||||||||  |||||||||||||  ||||| || |||||  | |||||||||||||    
T  12807113 tgaaacgctaacaagtgttcttagaacacttgataagaagtttaaaatgaaa-atttatcttggaatttttatattcaatacatt 12807030  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 26761287 - 26761227
Alignment:
Q  414 ttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaac 474  Q
    ||||||||  ||||||||||||| |||||| ||| |||| |||||||||| ||||||||||    
T  26761287 ttgataagaggtttaaaatgaaaattttatcttaaaatttgtgtattcaacacattaaaac 26761227  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 1260229 - 1260295
Alignment:
Q  13 cactccaaatgagtttgtcatcaatgtcactatcaatggtaatgctacaaatacaattttggtaaaa 79  Q
    |||| ||||||||||| || ||  |||||  ||||||||||||||||| ||| ||||||||||||||    
T  1260229 cacttcaaatgagtttatcttcggtgtcatgatcaatggtaatgctacgaatgcaattttggtaaaa 1260295  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 474
Target Start/End: Original strand, 44529222 - 44529309
Alignment:
Q  386 gaaatgctaacaagtgttcttaggaaacttgataagctgtttaaaatgaaatttttattttagaattagtgtattcaatacattaaaac 474  Q
    |||||||||||||||| |||||||| | ||||||||  ||||||| || || |||||| ||| || | |||||||||| | ||||||||    
T  44529222 gaaatgctaacaagtg-tcttaggacatttgataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaac 44529309  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 421
Target Start/End: Complemental strand, 30977882 - 30977848
Alignment:
Q  387 aaatgctaacaagtgttcttaggaaacttgataag 421  Q
    |||||||||||||||||||||||| ||||||||||    
T  30977882 aaatgctaacaagtgttcttaggacacttgataag 30977848  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 40644916 - 40644870
Alignment:
Q  13 cactccaaatgagtttgtcatcaatgtcactatcaatggtaatgcta 59  Q
    |||||||||||||||| ||||||||||||  || |||||||||||||    
T  40644916 cactccaaatgagtttatcatcaatgtcatgatgaatggtaatgcta 40644870  T

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