View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-14 (Length: 482)
Name: NF3892-Insertion-14
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 51 - 399
Target Start/End: Original strand, 40841783 - 40842134
Alignment:
| Q |
51 |
aggggagggaatgattcactcttcttacacacccttcttggacaaaggtaaactactattcacttttaacctagaacttcccttgtgatgtttcataact |
150 |
Q |
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| T |
40841783 |
aggggagggaatgattcactcttcttacacacccttcttggacaaaggtaaactactattcacttttgacctagaacttcccttgtgatgtttcataact |
40841882 |
T |
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| Q |
151 |
gttgtgattatacgtaataggttgataaaactgggctacactacaatatggacgaacacatcaactttaacgttagtagccttattcacccttttgaaaa |
250 |
Q |
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| T |
40841883 |
attgtgattatacgtaataggttgataaaactgggctacactacaatatggacgaacacatcaactttaacgttagtagccttattcacccttttgaaaa |
40841982 |
T |
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| Q |
251 |
gtttataatttgagggtatgggccatagggtaaattgaaccatgcatgcctcatcccgttctctcttggatgtaagtttcttaataaattatacttttta |
350 |
Q |
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| T |
40841983 |
gtttataatttgagggtatgggccatagggtaaattgaaccatgcatgcctcatcccgttctctcttggatgtaagtttcttaataaattatacttttta |
40842082 |
T |
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| Q |
351 |
gtttttgtattgc---cttcgcactttaaaatacgttctacttacttctcac |
399 |
Q |
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| T |
40842083 |
gtttttttattaccttcttcgcattttaaaatacgtactacttacttctcac |
40842134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 40842107 - 40842184
Alignment:
| Q |
400 |
tttaaaatacattttacttacttctcacacgtcctctgaatcaacaatttcaccactgttttgattttatatttcaaa |
477 |
Q |
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| T |
40842107 |
tttaaaatacgtactacttacttctcacacgtcctctgaatcgacaatttcaccactgttttgattttatattccaaa |
40842184 |
T |
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