View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-15 (Length: 460)
Name: NF3892-Insertion-15
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 460
Target Start/End: Complemental strand, 46008789 - 46008336
Alignment:
| Q |
7 |
acttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008789 |
acttgatgtgtattttggtctcttggagtagttgttggtgaatgtttatggttgttatcattgaatctgctgagtcttggggaatgagatgtgtttgttg |
46008690 |
T |
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| Q |
107 |
agggtacttttccttgatttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcactttttcttgttctctgtt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008689 |
agggtacttttccttgatttgattcatctaatggtttaagagctttcttgaatttgatttgagcaacaaaatcttctttcactttttcttgttctctgtt |
46008590 |
T |
|
| Q |
207 |
tttcactgtgttggtgatgtccataccaacttttctactcatactctctttaacctgtttaacaatttgccttgcataatgacttggacttctgcaatta |
306 |
Q |
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| T |
46008589 |
tttcactgtgttggtgatgtccataccaacttttctactcatactctctttaacctgtttaacaatttgccttgcataatgacttggacttctgcaatta |
46008490 |
T |
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| Q |
307 |
ttctcatcaaaaaatttcctttttgaaaatgaagacctaggagtttccaaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008489 |
ttctcatcaaaaaatttcctttttgaaaatgaagacctaggagtttccaaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctat |
46008390 |
T |
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| Q |
407 |
gctcaacatatgatgttctttctgaggacaatgttggagttttgatgacactat |
460 |
Q |
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| T |
46008389 |
gctcaacatatgatgttctttctgaggacaatgttggagttttgatgacactat |
46008336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 323 - 417
Target Start/End: Complemental strand, 16781629 - 16781535
Alignment:
| Q |
323 |
tcctttttgaaaatgaagacctaggagtttccaaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctatgctcaacatat |
417 |
Q |
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| T |
16781629 |
tcctttttgaaaatgaataccgatgagtctctaaatcttcaccaagattcatattctctttgttgatttggagagatagtttatgctcaacatat |
16781535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 19221262 - 19221159
Alignment:
| Q |
355 |
aaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctatgctcaacatatgatgttctttctgaggacaatgttggagttttgatga |
454 |
Q |
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|||| ||||||||||||||||||| |||||||||||| || || | | ||| ||||||||||||||||||||| |||||| | ||||| ||||||| | |
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| T |
19221262 |
aaattttcaccaagattcatgttcactttgttgatttagaaagaaattatatcctcaacatatgatgttctttcgaaggacactcttggaattttgatta |
19221163 |
T |
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| Q |
455 |
cact |
458 |
Q |
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|||| |
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| T |
19221162 |
cact |
19221159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 355 - 458
Target Start/End: Complemental strand, 20298219 - 20298116
Alignment:
| Q |
355 |
aaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctatgctcaacatatgatgttctttctgaggacaatgttggagttttgatga |
454 |
Q |
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||||||||||||||||| ||||||||| ||||||||| ||| || ||||||| ||||||||||||||||||||| ||| || | ||||||||||||| | |
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| T |
20298219 |
aaatcttcaccaagatttatgttctctatgttgatttagagagaaagtctatcctcaacatatgatgttctttcgaaggtcactattggagttttgatca |
20298120 |
T |
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| Q |
455 |
cact |
458 |
Q |
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|||| |
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| T |
20298119 |
cact |
20298116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 355 - 460
Target Start/End: Complemental strand, 20354867 - 20354762
Alignment:
| Q |
355 |
aaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctatgctcaacatatgatgttctttctgaggacaatgttggagttttgatga |
454 |
Q |
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||||||||||| ||||| ||||||||| ||||||||| ||| || ||||||| ||||||||||||||||||||| ||| || | ||||||||||| | | |
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| T |
20354867 |
aaatcttcacctagatttatgttctctatgttgatttagagagaaagtctatcctcaacatatgatgttctttcgaaggtcactcttggagttttggtta |
20354768 |
T |
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| Q |
455 |
cactat |
460 |
Q |
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| T |
20354767 |
cactat |
20354762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 458
Target Start/End: Original strand, 55038 - 55141
Alignment:
| Q |
355 |
aaatcttcaccaagattcatgttctctttgttgatttggagtgatagtctatgctcaacatatgatgttctttctgaggacaatgttggagttttgatga |
454 |
Q |
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|||| ||||||||||||||||||| |||||||||||| || || | ||||| ||||||||||||||||||||| |||||| | ||||||||||||| | |
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| T |
55038 |
aaattttcaccaagattcatgttcactttgttgatttagaaagaaattctatcctcaacatatgatgttctttcgaaggacactcttggagttttgatta |
55137 |
T |
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| Q |
455 |
cact |
458 |
Q |
| |
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|||| |
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| T |
55138 |
cact |
55141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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